Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25845 54 / 2e-09 unknown protein AT4G25850 56 / 6e-09 ORP4B OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) AT5G57400 46 / 3e-06 unknown protein AT5G01790 41 / 0.0002 unknown protein AT2G40475 40 / 0.0003 ASG8 ALTERED SEED GERMINATION 8, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G167300 [exp] 226 / 2e-75 AT4G25845 78 / 2e-18 unknown protein Potri.016G133200 [exp] 49 / 3e-07 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.006G107200 [exp] 47 / 2e-06 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 44 / 2e-05 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019869 [exp] 56 / 2e-09 AT4G25850 48 / 4e-07 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Lus10006969 [exp] 48 / 2e-06 AT4G25850 57 / 7e-10 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Lus10025480 [exp] 42 / 0.0002 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G091900.1 pacid=42801523 polypeptide=Potri.018G091900.1.p locus=Potri.018G091900 ID=Potri.018G091900.1.v4.1 annot-version=v4.1 ATGGATTTTGTCCATGGCGGTACTGATAGTACTGATCATGAGAAGAAAACTTCTGTTCTTCAAGGAGATAATTTCTTCATCGATAGAGTTATCTCAAGAA ACTCTTCTGTGGGTTGCTCTTCGCGTATATTCTACTACCGGAGTGCAGAAGGGGTACCATTTAAATGGGAAATGCAGCCAGGGACACCCAGAGATCCCCC CAAAGAAGAAATTATTCCCGCACTTAGCCCCCCACCGGCTATGCTCAGCTTAGGGTTGCCAAAGCCATGCATAGATATTGAAGAGCCTAAGACTTCAATG CGGTCAAGGTTCAGATTCTGGAAACACATCAAGAAAAATAAAAGAAACAAGAAATCCCAACAAGGGTCTGAGGGGAATAATGTTGTAAATGTTGCTAATG ACGAGTCTTGTACATTTGAAAGGTTTGATTTTTATGGCTCTGATAATGGTGATTTCATAGCCTCGTCTCCGCGCAATTCAAGCTCTTCATCTTCACTGTC TTCCTCTAATGGCCATTCAAGGCAATTGCCGAGAATTGAGAGTCCTTCTAGGGGATCAACGCAAGAGCCTCATGGTTGCATTCCTTGGAATTTTAACGCA GTTCTTGTTAGTGTTGCGAGGCGAAATATCTGA
AA sequence Show only first row Show all	>Potri.018G091900.1 pacid=42801523 polypeptide=Potri.018G091900.1.p locus=Potri.018G091900 ID=Potri.018G091900.1.v4.1 annot-version=v4.1 MDFVHGGTDSTDHEKKTSVLQGDNFFIDRVISRNSSVGCSSRIFYYRSAEGVPFKWEMQPGTPRDPPKEEIIPALSPPPAMLSLGLPKPCIDIEEPKTSM RSRFRFWKHIKKNKRNKKSQQGSEGNNVVNVANDESCTFERFDFYGSDNGDFIASSPRNSSSSSSLSSSNGHSRQLPRIESPSRGSTQEPHGCIPWNFNA VLVSVARRNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25845			unknown protein		Potri.018G091900 [exp]	0	1
AT2G23755			unknown protein		Potri.007G032900 [exp]	6.70	0.9075
					Potri.002G231250 [exp]	13.78	0.8759
AT3G18180			Glycosyltransferase family 61 ...		Potri.015G042200 [exp]	20.29	0.8962
AT1G18390			Protein kinase superfamily pro...		Potri.010G145400 [exp]	22.38	0.8942
AT1G56130			Leucine-rich repeat transmembr...		Potri.007G067900 [exp]	23.32	0.8921
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	34.55	0.8920	Pt-CWINV.1
AT1G58170			Disease resistance-responsive ...		Potri.005G100600 [exp]	41.10	0.8854
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026400 [exp]	41.36	0.8650
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.016G021600 [exp]	41.95	0.8905
AT3G18170			Glycosyltransferase family 61 ...		Potri.015G042300 [exp]	45.05	0.8784

Compare expression of checked genes

Potri.018G091900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.