Plant FIBer expression Database

Potri.018G092000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57410 610 / 0 Afadin/alpha-actinin-binding protein (.1.2.3)
AT2G18876 567 / 0 Afadin/alpha-actinin-binding protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015526
[exp]
587 / 0 AT5G57410 566 / 0.0 Afadin/alpha-actinin-binding protein (.1.2.3)
Lus10019997
[exp]
425 / 1e-149 AT5G57410 417 / 2e-146 Afadin/alpha-actinin-binding protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11559 ADIP Afadin- and alpha -actinin-Binding
Representative CDS sequence
>Potri.018G092000.2 pacid=42800673 polypeptide=Potri.018G092000.2.p locus=Potri.018G092000 ID=Potri.018G092000.2.v4.1 annot-version=v4.1
ATGCCAACTTCTGATACTGACTTCGATCTCAGCTCCTCTCCCGCATCTGCCTTCTCAATCGGAGAGTATACATTTGCTGATGTGAATAACTTGGAGCATT
GTGCAAAGTACTTGAACCAGACTCTTGTTACCTTTGGTTTCCCTGCCTCTCTTGATCTTTTCGCTAATGATCCGGTTTCAACCGCCCGAACCTGCAACTG
CATTTACTCTTTGCTTCAACAGAGGCAGCGCGACGTTGAATTTAGAGAATCTGCCAGTGAGCAGAGACAGAGACTACTATCAGATATATCGAGATTGGAA
GCTAAGGTTGAGAGGCTTGAGTCGCAGTTACAAGCCAAAGATAGAGAGATAGCGACAATAACTAGAACGGAAGCCAAAGCTACAGCAGCTTTTAAGGCCC
AAATTGAAAAGCTTCAACAAGAACGTGATGAATTTCAAAGGATGGTAATTGGTAATCAGCAAGTGAGGACTCAACAAATACATGAAATGAAGAAAAAAGA
AAAGGAGTACATAAAGTTGCAGGAGAGGCTAAACCAAGTGTTAATGGAGAAAAAGAAGGAATCACGATCAGGCATGGAGATAATGAATTTGCTTCAGAAA
GAAGGGCGGCAGCGTGGGACATGGAACGGAAAGAAGGCTGATAATGATTTCTACAAGAAAATTGTGGATGCTTGTGAGGCTAAAAATCAAGAGTTAATGG
CAGAGAATAATGATTTAAGGGCATTGCTGCGGTCAATGCAGGTTGATATGCGTGACTTCTTCAATGCACCAAATGGGTCATCCAAACAATCTCCACCTGC
CAATGAGAGACTTGTAACAGACCCCTCACAATCTCCCTTGGGTGGGAGGACGGATGTGTTTGACTTGCCTTTTCACATGGCTAGAGATCAAATTGAAGAA
AGTCTCCGAACCAAGATGTCTTCCATAAAGGAGCGTATGGTTCAACTACAAGATGCACAGAAAGGAGCAGAAGTCACCTCTGAAGCGACTGAGAGAGAAC
TAGAGCTCGAAGCTCAACTTGTTGAGGCAAGAAGCATAATCCAGGAGCAGGCATCTATAATGTCTAAGCATCTTGCGAAGTCAGAGAGGCCAAGGGAATC
TATCATCTCTTCACCAGCTGAGGGAGTACGAGACCAACGGGGTTGA
AA sequence
>Potri.018G092000.2 pacid=42800673 polypeptide=Potri.018G092000.2.p locus=Potri.018G092000 ID=Potri.018G092000.2.v4.1 annot-version=v4.1
MPTSDTDFDLSSSPASAFSIGEYTFADVNNLEHCAKYLNQTLVTFGFPASLDLFANDPVSTARTCNCIYSLLQQRQRDVEFRESASEQRQRLLSDISRLE
AKVERLESQLQAKDREIATITRTEAKATAAFKAQIEKLQQERDEFQRMVIGNQQVRTQQIHEMKKKEKEYIKLQERLNQVLMEKKKESRSGMEIMNLLQK
EGRQRGTWNGKKADNDFYKKIVDACEAKNQELMAENNDLRALLRSMQVDMRDFFNAPNGSSKQSPPANERLVTDPSQSPLGGRTDVFDLPFHMARDQIEE
SLRTKMSSIKERMVQLQDAQKGAEVTSEATERELELEAQLVEARSIIQEQASIMSKHLAKSERPRESIISSPAEGVRDQRG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57410 Afadin/alpha-actinin-binding p... Potri.018G092000
[exp]
0 1
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Potri.002G118000
[exp]
8.83 0.8857
AT3G54950 pPLAIIIbeta, PL... patatin-related phospholipase ... Potri.012G123900
[exp]
9.00 0.8549
AT1G26355 SP1L1 SPIRAL1-like1 (.1) Potri.008G097000
[exp]
10.77 0.8821
AT4G22330 ATCES1 Alkaline phytoceramidase (aPHC... Potri.001G317400
[exp]
13.11 0.8546
AT4G02600 MLO1, ATMLO1 MILDEW RESISTANCE LOCUS O 1, S... Potri.007G146900
[exp]
14.83 0.8313
AT4G16650 O-fucosyltransferase family pr... Potri.001G157400
[exp]
17.66 0.8164
AT2G03510 SPFH/Band 7/PHB domain-contain... Potri.010G158700
[exp]
18.76 0.8429
AT1G66150 TMK1 transmembrane kinase 1 (.1) Potri.017G134900
[exp]
23.06 0.8381 TMK1.1
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Potri.001G292900
[exp]
25.39 0.8375
AT4G15930 Dynein light chain type 1 fami... Potri.008G219900
[exp]
25.69 0.8534

Potri.018G092000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.