Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PSC450.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30210 984 / 0 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 836 / 0 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT3G02280 253 / 7e-75 Flavodoxin family protein (.1) AT4G05390 65 / 4e-11 ATRFNR1 root FNR 1 (.1.2) AT1G30510 64 / 7e-11 ATRFNR2 root FNR 2 (.1.2.3) AT5G66190 61 / 4e-10 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G20020 61 / 1e-09 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT1G75200 52 / 2e-06 flavodoxin family protein / radical SAM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G167200 [exp] 1185 / 0 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.005G153800 [exp] 864 / 0 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106566 [exp] 430 / 3e-147 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106632 [exp] 278 / 3e-88 AT4G24520 269 / 1e-85 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.004G101100 [exp] 231 / 1e-66 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.001G371900 [exp] 63 / 3e-10 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.005G112900 [exp] 61 / 1e-09 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.011G027100 [exp] 56 / 2e-09 AT3G02280 144 / 2e-41 Flavodoxin family protein (.1) Potri.007G057200 [exp] 59 / 7e-09 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019996 [exp] 1013 / 0 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 1005 / 0 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 967 / 0 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10032842 [exp] 743 / 0 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10025485 [exp] 686 / 0 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10002416 [exp] 395 / 5e-133 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10025484 [exp] 275 / 3e-87 AT4G30210 318 / 2e-104 P450 reductase 2 (.1.2) Lus10017589 [exp] 208 / 3e-58 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10033550 [exp] 67 / 7e-13 AT3G02280 121 / 7e-33 Flavodoxin family protein (.1) Lus10041904 [exp] 63 / 4e-10 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain CL0042 [poplar] [flax] Flavoprotein PF00258 [poplar] [flax] Flavodoxin_1 Flavodoxin CL0076 [poplar] [flax] FAD_Lum_binding PF00667 [poplar] [flax] FAD_binding_1 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G092100.2 pacid=42801868 polypeptide=Potri.018G092100.2.p locus=Potri.018G092100 ID=Potri.018G092100.2.v4.1 annot-version=v4.1 ATGGAGTCATCAAGCAGCTCGATCAAAGTGTCTCCACTTGATCTTATGCAAGCCATAATCAAAGGCAAAGTGGACCCCGCGAATGTTTCATCGGAGTCCG GTGGTTCTGTTGCTGAGGTAGCAACTTTGATCCTCGAGAATCGTGAGTTTGTTATGATCTTAACTACTTCCATCGCTGTTTTGATCGGCTGCGTCGTCGT TTTGATTTGGAGAAGATCATCTGGGTATCAGAGACCCAAAGTACCTGTACCTCCCAAGCCCCTGATTGTTAAAGACCTTGAACCTGAAGTTGATGATGGC AAGAAAAAGGTCACCATCTTTTTCGGCACCCAAACCGGTACCGCAGAAGGATTTGCTAAGGCTCTAGCTGAGGAGGCAAAAGCTCGGTATGACAAGGCTA CATTTAAAACTGTTGATTTGGATGATTATGCGGGTGATGATGATGAATACGAAGAGAAATTGAAGAAAGAGGATCTGGTTATTTTCTTCTTGGCTACATA CGGAGATGGTGAGCCTACTGATAATGCGGCAAGGTTCTACAAATGGTTTACAGAGGGAAATGAGAGAGGGGAATGGCTCAAGGACCTTCCATTTGCAGTT TTTGGCCTTGGCAACAGGCAGTACGAGCATTTTAACAAGATTGCTATAGTGGTGGATAAAATCTTTGCTGACCAGGGTGGGAAGCGCCTTGCCGCAGTGG GTCTTGGTGATGATGATCAATGCATGGAAGATGACTTTGCTGCATGGCGGGAATTGTTGTGGCCTGAGATGGACCAGTTGCTTCTTGACGGAGACGATCC AACAGCTGTTTCTACTCCTTATGCTGCCACTGTATCAGAATATCGGGTTGTAGTCCATGACCCTGAAGATGCCCCATTAGAGGATGATAACTGGAGTAAT GCAAATGGTCATGCTGTCTATGATGCTCAGCATCCATGCAGGGCTAATGTTGCTGTGAGGAGGGAGCTTCATACCCCGGCATCTGATCGTTCATGTACCC ATCTGGAGTTAGAAATATCAGGCACCGGACTTGCATATGGAACTGGGGATCATGTTGGTGTGTACTGTGAAAATCTAAGTGAAACTGTAGAGGAAGCACT GCAGTTGTTGGGTTTATCACCAGATACTTATTTCTCTATCCACAATGATAATGTGGATGGCACACCACTTAGTGGAAGCGCCCTGCCACCTCCATTCCCA CCGTCCACCTTAAAAACTGCTCTAGCTCGATATGCTGATCTTTTGAGTTTGCCCAAGAAGTCTGCTCTAATGGCTTTAGCAGCTCATGCTACTGATCCAA CAGAAGCTGATCGACTAAGGCATCTTGCATCGCCTGCTGGGAAGGATGAATATGCACAATTGTTAGTTGCAAATCAGAGAAGCCTCCTTGAGGTCATGGC TGAATTTCCATCAGCCAAGCCCCCACTTGGTGTCTTCTTTGCTTCAGTTGCTCCTCGATTGCAGCCAAGATACTATTCTATTTCATCATCTCCAAGCATG GCTCCATCAAGAATTCATGTTACATGTGCACTGGTTCTTGAAAAAACACCAGGAGGTCGTATTCACAAAGGAGTGTGCTCAACTTGGATGAAGAACGCTG TGCCTCTGGAGAAAAGCCATGATTGCAGCTGGGCACCTGTTTTTGTTAGGCAATCAAACTTCAAACTCCCAGAAGATGCTAAAGTTCCCATCATTATGAT TGGCCCTGGAACTGGTTTAGCTCCCTTCAGAGGTTTCCTCCAGGAAAGATTAGCCCTGAAAGAAGCAGGATCAGAACTGGGATCCTCTGTATTATTCTTT GGTTGCAGGAACCGCAAAATGGATTTTATCTATGAAGACGAGCTCAACAACTTCGTTGAAAGTGGTGCACTTTCTGAACTAGTTGTTGCCTTTTCCCGTG AGGGACCTACCAAGGAATACGTGCAGCATAAGATGATGCAGAAGGCTTCTGATATCTGGAACATGATTTCACAAGGTGGATATTTATATGTTTGTGGTGA TGCCAAAGGCATGGCTAAAGATGTCCACAGAGCGCTCCACACTATTGTGCAAGAGCAGGGATCCTTCGACAACTCAAGGACAGAAAGCTTTGTGAAGAGT CTGCAAATGAATGGCAGGTATCTACGTGATGTATGGTAA
AA sequence Show only first row Show all	>Potri.018G092100.2 pacid=42801868 polypeptide=Potri.018G092100.2.p locus=Potri.018G092100 ID=Potri.018G092100.2.v4.1 annot-version=v4.1 MESSSSSIKVSPLDLMQAIIKGKVDPANVSSESGGSVAEVATLILENREFVMILTTSIAVLIGCVVVLIWRRSSGYQRPKVPVPPKPLIVKDLEPEVDDG KKKVTIFFGTQTGTAEGFAKALAEEAKARYDKATFKTVDLDDYAGDDDEYEEKLKKEDLVIFFLATYGDGEPTDNAARFYKWFTEGNERGEWLKDLPFAV FGLGNRQYEHFNKIAIVVDKIFADQGGKRLAAVGLGDDDQCMEDDFAAWRELLWPEMDQLLLDGDDPTAVSTPYAATVSEYRVVVHDPEDAPLEDDNWSN ANGHAVYDAQHPCRANVAVRRELHTPASDRSCTHLELEISGTGLAYGTGDHVGVYCENLSETVEEALQLLGLSPDTYFSIHNDNVDGTPLSGSALPPPFP PSTLKTALARYADLLSLPKKSALMALAAHATDPTEADRLRHLASPAGKDEYAQLLVANQRSLLEVMAEFPSAKPPLGVFFASVAPRLQPRYYSISSSPSM APSRIHVTCALVLEKTPGGRIHKGVCSTWMKNAVPLEKSHDCSWAPVFVRQSNFKLPEDAKVPIIMIGPGTGLAPFRGFLQERLALKEAGSELGSSVLFF GCRNRKMDFIYEDELNNFVESGALSELVVAFSREGPTKEYVQHKMMQKASDIWNMISQGGYLYVCGDAKGMAKDVHRALHTIVQEQGSFDNSRTESFVKS LQMNGRYLRDVW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.018G092100 [exp]	0	1	PSC450.1
AT3G26890			unknown protein		Potri.015G103500 [exp]	3.16	0.7749
AT2G38610			RNA-binding KH domain-containi...		Potri.013G159800 [exp]	6.32	0.8303
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.016G133500 [exp]	6.92	0.7923
AT3G57400			unknown protein		Potri.016G056300 [exp]	10.09	0.7244
AT3G50910			unknown protein		Potri.007G022100 [exp]	10.48	0.8089
AT2G37940		ERH1, AtIPCS2	enhancing RPW8-mediated HR-lik...		Potri.006G093800 [exp]	12.00	0.7866
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Potri.016G062100 [exp]	13.63	0.7168
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014350 [exp]	15.58	0.8082
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Potri.018G143100 [exp]	17.97	0.7635
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Potri.018G096084 [exp]	18.00	0.7705

Compare expression of checked genes

Potri.018G092100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.