Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59720 810 / 0 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 472 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G48910 450 / 4e-151 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31920 445 / 1e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 440 / 2e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 427 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 427 / 4e-141 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 423 / 4e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 420 / 4e-140 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 415 / 2e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001000 [exp] 476 / 1e-161 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 459 / 2e-155 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 456 / 2e-153 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 457 / 8e-153 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 453 / 1e-152 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 446 / 4e-150 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 441 / 1e-149 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G135400 [exp] 444 / 3e-149 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 442 / 3e-148 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037229 [exp] 727 / 0 AT1G59720 719 / 0.0 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 454 / 7e-153 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 448 / 3e-151 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010385 [exp] 448 / 1e-150 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005207 [exp] 445 / 3e-149 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10014298 [exp] 428 / 9e-143 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 432 / 1e-142 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 421 / 7e-140 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 421 / 9e-140 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039388 [exp] 419 / 1e-139 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.018G092400.1 pacid=42801359 polypeptide=Potri.018G092400.1.p locus=Potri.018G092400 ID=Potri.018G092400.1.v4.1 annot-version=v4.1 ATGGTTCTGGGAGTCATACAAAGCCCACCTCCTCAGATCGTGACCTCCAAGCCCACCAATCATTACAACCTTCTTCTGCAGCATTTGAATGAATGCAAGG ACATGTCACAGCTCAAGCAAATCCACGCTCTCTCTCTACGTTCCACCTTGCCAAACCACTCAACCACTCTCTTTCTCTACAGTCGAATTCTCCATTTCTC TTCCCTCCATGATCTTAACTACGCTTATCGAGTGTTCGATCAAGTTGACAACCCTAATTCATTTATGTGGAACATTCTTATCAGAGCCTGTGCACAAAGC CAAAGCGTTCATCTTAAACGAGAAGCTATTTTGCTGTATAACACTATGCTACAGCGATCATCACCCTTCCCCGATAACCACACCTTCCCCTTCGTTTTAA AGGCTTGCGCATATTTGTTTGCTTTGTTTGAAGGGAAACAAGCACACGCCCACTTGTTAAAACTTGGGTTTCAATCTGATGTCTATATAAATAACAGCCT CATTCATTTCTATGCTTCCTGCGGTAGTTTGGAGTCCGCAAAGAATGTGTTTGATAAAATGCCGCAGAGAAGTTTGGTTTCATGGAATGCTATGATTGAC GCGTTTGTTCTGTTTGGTGAGTTTGAAACTGCTTTGCAATTGTTTGTTCAGTTTCAGCAGCAGTTCTTTGAGCCAGATGGGTATACAATTCAGAGTGTTA TAAATGCTTGTGCTGGCCTGTGTGCTTTGTCTCTGGGGATGTGGGCTCATGCTTTTTTGTTGAGAAACTGTGGTGTTTCTGTAGCTAGAGATCATGTTTT GGTTAACAATTCTTTGTTGGATATGTATTGCAAATGTGGGTCGTTGGATATTGCTACGCAGATCTTTGAGGGGATGCAAAAGCACGATGTAACTTCATGG AATTCAATGATTTTAGGATTTGCCATGCATGGAAAAGGTGAGTTAGCATTGGAGTGTTTTGAACGCATGATTAGGATATCGAGATTTGTTCCGAATTCTA TCACGTTTGTTGGGGTTTTGAGCGCGTGTAACCACAGGTATATGGTTAATGAGGGCCGCAAGTATTTTGACATGATGGTTAACGAATACAAGATAGAACC TCAATTAGAACACTACGGATGCCTAGTCGATATCCTGGCCCGTGCTGGTTTGATTGATGAAGCTTTGGAATTGGTTGCAAGCATGCCCATGAAACCAGAT GTTGTTATATGGAGGAGTCTCCTAGATTCCTGTTGCAAGAAAAATGCAAGCGTCGAGCTAAGTGAAAATATAGCTAGGCAGATCCTTGAGTCAGAAGAAG CTGATTCTAGTGGAGTTTATGTGCTCTTATCCAGAGTCTATGCATCGGCTAGCAGGTGGAATGATGTTGGCTTGGTTAGAAAATTGATGACTAACAATGG CATATTGAAAGAGCCTGGCTGTAGTTTGATTGAGGTAGATGGTGTTACCCACGAATTTTTTGCTGGGGACACCTCTCATCCTCAAACTAAAGAAATATAT CAGGTTTTGAATGTGGTTGAAGAAAGGATAGATTCAACAGGGTATAAACCTGACTATTCGCAAGCACCTATGGTTGATGAGCTGAACACTAGCAAGCGAG ACAGTCTTAGGCTGCACAGCGAGAGACTTGCCATTGCTTTGGGGCTTTTAAACTTGAAACCAGGAATGCCAATACGTATTTTCAAGAACCTTCGGGTCTG TGATGACTGCCACAAGGTCACTGGATTAATTTCTGAAATCTTCAATGTGGAGATTATTGTGAGAGATCGCGTTCGATTCCATCACTTTAAAGACGGTTCC TGTTCATGCATGGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.018G092400.1 pacid=42801359 polypeptide=Potri.018G092400.1.p locus=Potri.018G092400 ID=Potri.018G092400.1.v4.1 annot-version=v4.1 MVLGVIQSPPPQIVTSKPTNHYNLLLQHLNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQS QSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMID AFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSW NSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPD VVIWRSLLDSCCKKNASVELSENIARQILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSHPQTKEIY QVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSERLAIALGLLNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGS CSCMDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Potri.018G092400 [exp]	0	1
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	1.41	0.9825
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	4.47	0.9692
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.004G237000 [exp]	4.58	0.9686
AT2G40720			Tetratricopeptide repeat (TPR)...		Potri.001G258500 [exp]	6.00	0.9499
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	7.21	0.9612
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	7.48	0.9532
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Potri.001G390600 [exp]	9.16	0.9455
AT3G03630		CS26	cysteine synthase 26 (.1)		Potri.019G045800 [exp]	11.48	0.9564
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	13.60	0.9565
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.008G112700 [exp]	16.61	0.9482

Compare expression of checked genes

Potri.018G092400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.