Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57440 398 / 2e-142 GPP2, GS1 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G25840 387 / 6e-137 GPP1 glycerol-3-phosphatase 1 (.1) AT4G21470 139 / 6e-39 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT1G56500 59 / 8e-10 haloacid dehalogenase-like hydrolase family protein (.1) AT3G48420 49 / 1e-06 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G38740 42 / 0.0001 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077200 [exp] 147 / 4e-42 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 138 / 9e-39 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.013G007800 [exp] 50 / 7e-07 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.015G088500 [exp] 44 / 4e-05 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 44 / 5e-05 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147400 [exp] 43 / 7e-05 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006954 [exp] 403 / 2e-143 AT5G57440 387 / 4e-137 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10025466 [exp] 374 / 1e-132 AT5G57440 357 / 1e-126 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018906 [exp] 155 / 3e-45 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 150 / 2e-43 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018435 [exp] 141 / 9e-40 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10020699 [exp] 60 / 4e-10 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10029840 [exp] 59 / 7e-10 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10013663 [exp] 58 / 1e-09 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10033034 [exp] 57 / 2e-09 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10023149 [exp] 55 / 1e-08 AT4G39970 423 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G092500.1 pacid=42801391 polypeptide=Potri.018G092500.1.p locus=Potri.018G092500 ID=Potri.018G092500.1.v4.1 annot-version=v4.1 ATGGCCAATCCTTCCGCTCCTGTTTCAGGCGAAAAAGGACCCATCACTCACGTCATCTTCGACATGGATGGTCTTTTACTCGATACGGAGAAATTCTATA CTGAAGTTCAAGAAATCATACTTGCTAGATACAATAAAGCTTTTGATTGGTCTCTCAAGGCAAAAATGATGGGGAAGAAGGCTATAGAATCAGCTCGGAT CTTTGTTGAGGAGACTGGGATTAGTGACTCTCTTTCAGCTGAAGACTTTCTTGTGGAAAGGGAGGCCATGCTGCAAAGCCTATTTCCAACAAGTGACCTG ATGCCAGGGGCAAGCCGTTTGATCAGACATCTCCATGCAAAAGGAATACCGATTGCCGTGGCAACTGGCTCTCACAAGCGCCATTTTGGTTTGAAAACAC AAAGACACAGTGAACTTTTCTCATTGATGCATCATATTGTTCTTGGAGACGACCCAGAAGTTAAACAAGGCAAACCATCACCAGATGTATTTCTAGCTGC AGCCAGGAGATTCGAGGGTGGCCCAGTAGATCCAATGAAGATTCTTGTTTTTGAAGATGCACCTGCAGGTGTTCTTGCAGCCAAGACTGCTGGGATGTCT GCGGTAATGGTTCCAGATCCGAGGCTGGATAGCTCTCATCATGAAACTGCAGATCAAGTTTTAAGTTCCCTGTTGGACTTCAACCCAAGTTATTGGGGCT TGCCTCCTTTCGAGGGTGTGGAAAGCTGA
AA sequence Show only first row Show all	>Potri.018G092500.1 pacid=42801391 polypeptide=Potri.018G092500.1.p locus=Potri.018G092500 ID=Potri.018G092500.1.v4.1 annot-version=v4.1 MANPSAPVSGEKGPITHVIFDMDGLLLDTEKFYTEVQEIILARYNKAFDWSLKAKMMGKKAIESARIFVEETGISDSLSAEDFLVEREAMLQSLFPTSDL MPGASRLIRHLHAKGIPIAVATGSHKRHFGLKTQRHSELFSLMHHIVLGDDPEVKQGKPSPDVFLAAARRFEGGPVDPMKILVFEDAPAGVLAAKTAGMS AVMVPDPRLDSSHHETADQVLSSLLDFNPSYWGLPPFEGVES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Potri.018G092500 [exp]	0	1
AT3G56340			Ribosomal protein S26e family ...		Potri.019G057000 [exp]	10.53	0.9081	RPS26.2
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.002G140400 [exp]	11.13	0.9071	Pt-RPS11.5
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.004G085300 [exp]	16.34	0.9063	RPL24.1
AT5G04800			Ribosomal S17 family protein (...		Potri.008G017300 [exp]	16.49	0.9055
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Potri.009G071400 [exp]	20.78	0.8574
AT5G59613			unknown protein		Potri.010G207600 [exp]	22.80	0.8813
AT2G19730			Ribosomal L28e protein family ...		Potri.001G194000 [exp]	24.73	0.8999
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.014G123100 [exp]	25.09	0.8793
AT2G19730			Ribosomal L28e protein family ...		Potri.003G045500 [exp]	25.98	0.9026
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Potri.004G196500 [exp]	26.68	0.8952	Pt-RPL30.1

Compare expression of checked genes

Potri.018G092500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.