Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57450 312 / 2e-106 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) AT2G45280 82 / 1e-17 ATRAD51C RAS associated with diabetes protein 51C (.1.2) AT3G22880 76 / 2e-15 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) AT5G20850 71 / 9e-14 ATRAD51 RAS associated with diabetes protein 51 (.1) AT2G28560 67 / 2e-12 ATRAD51B, RAD51B DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) AT1G07745 53 / 7e-08 SSN1, ATRAD51D, RAD51D SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068100 [exp] 81 / 3e-17 AT2G45280 398 / 2e-139 RAS associated with diabetes protein 51C (.1.2) Potri.010G081500 [exp] 73 / 3e-14 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.006G135200 [exp] 68 / 9e-13 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004464 [exp] 333 / 9e-115 AT5G57450 325 / 2e-111 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Lus10029944 [exp] 130 / 1e-37 AT5G57450 110 / 1e-30 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Lus10000790 [exp] 74 / 6e-15 AT2G45280 388 / 3e-136 RAS associated with diabetes protein 51C (.1.2) Lus10023341 [exp] 74 / 2e-14 AT2G28560 468 / 2e-163 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10038467 [exp] 66 / 5e-12 AT2G28560 430 / 2e-151 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10039928 [exp] 64 / 3e-11 AT5G20850 530 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10027654 [exp] 62 / 1e-10 AT5G20850 531 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10006625 [exp] 61 / 2e-10 AT3G22880 582 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10015220 [exp] 61 / 3e-10 AT1G07745 273 / 6e-91 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10039383 [exp] 61 / 3e-10 AT3G22880 585 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08423 [poplar] [flax] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Potri.018G093100.1 pacid=42800498 polypeptide=Potri.018G093100.1.p locus=Potri.018G093100 ID=Potri.018G093100.1.v4.1 annot-version=v4.1 ATGTCCCAAATTCAATCTGATCCCTCAACTCACAACAATCTTCGTCCCGCATTCATGACACCGCAAAAGCTTCTCCCAGTCGAAAAATGCTCACTGGGAT GCCCCATCCTAGACTGCTGCATGGGCGGAGGCATCCCTTGCAACTCCATAACCGAAATCGTGGCTGAAAGTGGTTCCGGCAAAACCCAACTCTGCCTCCA ACTCTCCCTCCGCGCCCAACTCCCACCCTTCCTCGGCGGCCTGTCCGCTTCCTCTCTTTACCTCTACACCGAATTCCCGTTTCCCACTCGCCGCCTCCAC CAGCTCTCCAGTGCCCTTCAATGTCAATACCCACAAATATTCGTCAGCAATTATGATCCTTGTGATAGTATATTTCTGCAAAGTGTAAACACCGCAGACC AACTGCTCGATATAATGCCGCAAGTAGAATCATTTCTTGAAAACTCAAAAACCCGGTTGCCTGTCAGAGTGATTGTGATCGATTCCATGGCTGCATTGTT TAGGGCTGAGTTTGAGAATACAGCGAGTGATCTTATAAGGAGGTCGTCGTTGTTTTTTAAGATATCCGGGAAGCTAAAAGAGTTTGCGAAGAGGTTTAAT TTGGTGGTGCTGGTGACTAATCAAGTGATGGATGTTGTGGACTCTGGAGAGGGATTAAACGAGGTAAGGATTGGGAATTTGAGTGGTATGTATTCGTCTG GACGAAGGGTTTGTCCGGCTCTGGGATTGTCGTGGGCTAATTGTGTAAATTCGAGGTTGTTCTTGTCCAAAGATGAATATGAGAGTGGTTTGGTGGGTGG TGGTGAGAGTGGTTTTCTGTCTAGGGAAACGAGGAGAAGGCTTCACGTTGTTTTTGCGCCACATTTGCCTGATTTGTCTTGTGAGTTTGTGATCAGGAGA GAAGGGGTTGTGGGAGTCAACAGATAA
AA sequence Show only first row Show all	>Potri.018G093100.1 pacid=42800498 polypeptide=Potri.018G093100.1.p locus=Potri.018G093100 ID=Potri.018G093100.1.v4.1 annot-version=v4.1 MSQIQSDPSTHNNLRPAFMTPQKLLPVEKCSLGCPILDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRAQLPPFLGGLSASSLYLYTEFPFPTRRLH QLSSALQCQYPQIFVSNYDPCDSIFLQSVNTADQLLDIMPQVESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKEFAKRFN LVVLVTNQVMDVVDSGEGLNEVRIGNLSGMYSSGRRVCPALGLSWANCVNSRLFLSKDEYESGLVGGGESGFLSRETRRRLHVVFAPHLPDLSCEFVIRR EGVVGVNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G093100 [exp]	0	1
AT1G28690			Tetratricopeptide repeat (TPR)...		Potri.004G054000 [exp]	2.82	0.8999
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.003G087100 [exp]	3.87	0.8906
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	5.74	0.9286	CRR2.1
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	6.70	0.9188
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G084000 [exp]	8.24	0.9191
AT5G53070			Ribosomal protein L9/RNase H1 ...		Potri.012G121228 [exp]	10.39	0.8914
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	12.12	0.9081
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Potri.003G123200 [exp]	12.16	0.8360
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	12.64	0.9143
AT2G37400			Tetratricopeptide repeat (TPR)...		Potri.016G080000 [exp]	17.32	0.9186

Compare expression of checked genes

Potri.018G093100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.