Plant FIBer expression Database

Potri.018G093400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30240 263 / 7e-87 Syntaxin/t-SNARE family protein (.1)
AT2G18860 242 / 1e-78 Syntaxin/t-SNARE family protein (.1.2)
AT1G27700 142 / 9e-40 Syntaxin/t-SNARE family protein (.1)
AT1G28490 40 / 0.001 OSM1, ATSYP61, SYP61 syntaxin of plants 61 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G168800
[exp]
553 / 0 AT4G30240 273 / 9e-91 Syntaxin/t-SNARE family protein (.1)
Potri.014G019100
[exp]
156 / 1e-44 AT1G27700 276 / 1e-91 Syntaxin/t-SNARE family protein (.1)
Potri.017G125000
[exp]
99 / 2e-23 AT1G27700 106 / 6e-26 Syntaxin/t-SNARE family protein (.1)
Potri.004G090200
[exp]
99 / 4e-23 AT1G27700 97 / 1e-22 Syntaxin/t-SNARE family protein (.1)
Potri.015G078400
[exp]
39 / 0.0004 AT4G30240 40 / 7e-05 Syntaxin/t-SNARE family protein (.1)
Potri.004G050800
[exp]
40 / 0.001 AT1G28490 297 / 2e-102 syntaxin of plants 61 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007766
[exp]
152 / 2e-43 AT1G27700 292 / 2e-98 Syntaxin/t-SNARE family protein (.1)
Lus10018703
[exp]
152 / 3e-43 AT1G27700 290 / 2e-97 Syntaxin/t-SNARE family protein (.1)
Lus10017038
[exp]
107 / 8e-26 AT4G30240 105 / 3e-25 Syntaxin/t-SNARE family protein (.1)
Lus10021360
[exp]
104 / 8e-25 AT4G30240 108 / 1e-26 Syntaxin/t-SNARE family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09177 Syntaxin-6_N Syntaxin 6, N-terminal
Representative CDS sequence
>Potri.018G093400.8 pacid=42802038 polypeptide=Potri.018G093400.8.p locus=Potri.018G093400 ID=Potri.018G093400.8.v4.1 annot-version=v4.1
ATGATGGTAGCAAACAGTTTCGATCTATGGCAAAAAGATGCTTTCTTTTCTGCTGCAGAGGAGGTTCAGGAATCTGCTGATGCAATGGAGTCAGCATATA
GAGTGTGGACAAGAGAGAAGAGAGAGGGGTCAGAACCAGAGGATTTGGATGAACTATCCAGAGAGCTCCAAACTGCTTTAGGAACTGCCAAGTGGCAGTT
GGAAGAGTTTGAGAGGGCTGTTTGGTTGAGCCATGGACATCGTTCTGATGATATCACAGCATCTAGGCATAAACAATTTGTTGCAGCTATTGAAAGTCAA
ATATCTCGTGTTGAAGCGGCACTAAGGGAAGCTTTTAGTGGGGAAGGAAAGCAACCTCTTCGATGGGTGAATCTGGATAAAGAAGAATGCGATGATTTAG
CGATGTTTCTATCTGGAACTGTCCAAATTCCGCAGATTGTGAAAGATGATTGCACCACACTTAAATCTCCCATGAAAGGTTCTCTTGGGGAGAACCATCA
TAAGAGAAGAAATTTGGACCATAACTCGAGTGCCAACTGTAGTAGAGGTACTTCGGATGAAAATGAATTCATTACTAATAAGAAAAATGAACATATTATA
GATATAGAAGAGAAAGAAAATCTTGGAATGAGGAATGACATAATCTGTCAAGTTGATAAAACAATTGGCTCAAGGAGAACATGGAGTTCACCAAATTTTG
GTGCTTTGAAAATTGTGATTGCTCAGGACGATGGACAAAGGGATAAAGTGATGTCAAGTGTTGAGGCCACTCCTAAAGAAAAAGGGTACAAACCTTTCTT
CTGGAAGCAAAGGTGTGGAGAACATTCTCAGGCAAAGGGATCGATTACTTTGTTCAATAAGCTCTTTGGTCAGGCTGGTGGTCTCCAAAGGCAATTGCAA
CCTCCACTGCACCTGCAGTTCAGCTGTTCCATCCAACTTACTCTTGCTTTAATGCTCAGCATTTTCTTAATTGTGCCTTTTCTAGTTTATTCAGCTTGA
AA sequence
>Potri.018G093400.8 pacid=42802038 polypeptide=Potri.018G093400.8.p locus=Potri.018G093400 ID=Potri.018G093400.8.v4.1 annot-version=v4.1
MMVANSFDLWQKDAFFSAAEEVQESADAMESAYRVWTREKREGSEPEDLDELSRELQTALGTAKWQLEEFERAVWLSHGHRSDDITASRHKQFVAAIESQ
ISRVEAALREAFSGEGKQPLRWVNLDKEECDDLAMFLSGTVQIPQIVKDDCTTLKSPMKGSLGENHHKRRNLDHNSSANCSRGTSDENEFITNKKNEHII
DIEEKENLGMRNDIICQVDKTIGSRRTWSSPNFGALKIVIAQDDGQRDKVMSSVEATPKEKGYKPFFWKQRCGEHSQAKGSITLFNKLFGQAGGLQRQLQ
PPLHLQFSCSIQLTLALMLSIFLIVPFLVYSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30240 Syntaxin/t-SNARE family protei... Potri.018G093400
[exp]
0 1
AT4G09890 Protein of unknown function (D... Potri.007G077500
[exp]
2.00 0.9019
Potri.008G125350
[exp]
2.82 0.8714
AT4G32870 Polyketide cyclase/dehydrase a... Potri.006G237100
[exp]
7.74 0.8861
AT3G47570 Leucine-rich repeat protein ki... Potri.010G228300
[exp]
10.24 0.8593
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.017G054300
[exp]
12.00 0.7965
AT1G23380 HD KNAT6S, KNAT6L,... KNOTTED1-like homeobox gene 6 ... Potri.010G043500
[exp]
12.48 0.8530
AT4G04630 Protein of unknown function, D... Potri.004G014000
[exp]
15.29 0.8451
AT3G15518 unknown protein Potri.001G404500
[exp]
15.81 0.8363
AT2G38400 AGT3 alanine:glyoxylate aminotransf... Potri.016G132200
[exp]
17.43 0.8239 AGT3.1
AT5G06900 CYP93D1 "cytochrome P450, family 93, s... Potri.016G049900
[exp]
23.15 0.8553

Potri.018G093400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.