Plant FIBer expression Database

Potri.018G093501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05205 141 / 8e-46 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039669
[exp]
148 / 3e-48 AT1G05205 145 / 4e-47 unknown protein
Lus10027173
[exp]
146 / 9e-48 AT1G05205 149 / 8e-49 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G093501.2 pacid=42800432 polypeptide=Potri.018G093501.2.p locus=Potri.018G093501 ID=Potri.018G093501.2.v4.1 annot-version=v4.1
ATGAGCAAGGTGCCAAGAAGAGAGAGTCCATGGGGGATGCCAGAAGGAGACAATCGCGAACCAAAGGCACATCGATGCAATGATCGAGCTGAGGATGTTA
TCCAGGCTTGTTTTGAGGGAAACCCGTTTAAGACAGTTCCTGGACCTTTCAAGCTCTTCTGGCAATGCATGCGCTCTAAACCTGGGGAGGAACCAACAGA
GCCGTACACCTATTTGCAAATTGATCCCCCAAGGAGAGAGGTGCAACTTGAGTAA
AA sequence
>Potri.018G093501.2 pacid=42800432 polypeptide=Potri.018G093501.2.p locus=Potri.018G093501 ID=Potri.018G093501.2.v4.1 annot-version=v4.1
MSKVPRRESPWGMPEGDNREPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEPTEPYTYLQIDPPRREVQLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G05205 unknown protein Potri.018G093501
[exp]
0 1
AT1G53000 AtCKS, KDSB CMP-KDO synthetase, Nucleotide... Potri.001G400900
[exp]
3.74 0.7274
AT4G29480 Mitochondrial ATP synthase sub... Potri.006G231900
[exp]
4.47 0.7785
AT1G48440 B-cell receptor-associated 31-... Potri.012G042700
[exp]
5.47 0.7689
AT5G19760 Mitochondrial substrate carrie... Potri.003G220400
[exp]
7.74 0.7528
AT2G22370 unknown protein Potri.007G095300
[exp]
7.93 0.7497
AT5G58575 unknown protein Potri.001G279700
[exp]
8.94 0.7446
AT3G03070 NADH-ubiquinone oxidoreductase... Potri.013G082100
[exp]
9.43 0.7812
AT3G48590 CCAAT NF-YC1, ATHAP5A... "nuclear factor Y, subunit C1"... Potri.015G097400
[exp]
11.22 0.7122
AT1G77370 Glutaredoxin family protein (.... Potri.007G017300
[exp]
13.19 0.7503 PtrcGrx_C3
AT5G40810 Cytochrome C1 family (.1.2) Potri.004G203800
[exp]
14.83 0.7403

Potri.018G093501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.