Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27800 483 / 1e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27300 296 / 7e-95 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT3G25210 189 / 9e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01400 120 / 1e-29 unknown protein AT1G74580 112 / 2e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18475 110 / 6e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 110 / 9e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 110 / 9e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64580 109 / 1e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 107 / 7e-25 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248100 [exp] 211 / 5e-64 AT3G25210 506 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G105900 [exp] 134 / 1e-34 AT4G01400 576 / 0.0 unknown protein Potri.005G050180 [exp] 127 / 1e-31 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 127 / 1e-31 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 126 / 2e-31 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 126 / 2e-31 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 125 / 6e-31 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 125 / 8e-31 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 124 / 1e-30 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011029 [exp] 476 / 1e-167 AT2G27800 430 / 1e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038215 [exp] 159 / 1e-43 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025890 [exp] 139 / 5e-37 AT3G25210 430 / 6e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 119 / 1e-28 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002675 [exp] 118 / 2e-28 AT4G01400 570 / 0.0 unknown protein Lus10042452 [exp] 116 / 4e-28 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017658 [exp] 117 / 6e-28 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 115 / 2e-27 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 113 / 4e-27 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015397 [exp] 112 / 7e-27 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.018G093700.2 pacid=42801611 polypeptide=Potri.018G093700.2.p locus=Potri.018G093700 ID=Potri.018G093700.2.v4.1 annot-version=v4.1 ATGTGGGAAAAGAAGGGTGCTATTGGTGGAGATTGCTTGAGATACATCCTCTCTAAAAAAATTTTTATCAGTCCACCGTCCTGCATAAACACATTTCATT CCAAAAACTTGGCTAAATTTCCATTTCCCATATTGACCCAATATTCAGTTATTTCTTCATATTTGAACCCCACTGCCAGAAAATTGAAAGATGTAGATCT TTTAGCTCAAACACAAATTCTCCCAAGTTCCAACTTTTCTACCTTTTACTCGACTAAAGCCCCATCGAGATCTTTTAGAAAGAGAAATAACAAACGAGCA AAAGCCAACAGCAGGCCTATTCTTGATGAAGCTAAATTTCAACGGTCAGTTTCCCAACTCCCATCAAGATTCACCAATGAAGAATTGTGCAATAACATAA CTCTTGAAGATGATCCTTTAGTCTGTTTGGAGCTTTTCAATTGGGCATCACAACAACATAGGTTTAGGCATGATGCATCCACTTATCATGTCACTATAAA GAAGCTTGGAATTGCCAAAATGTACCAAGAGATGGATGATGTTGTCAACCAACTACTCGCTGTTCCTCATATTGGTAATGAGGCTTTATACAATTCAATT ATCTATTATTTTACTGAAGCTAGGAAGCTGACTAGAGCCGTGAATATATTTAAGCGCATGAAAAGTAGTAGAAACTTAGATTGTAGACCGTCAATTAAAA CATATAATATTCTTTTAACGGCAATGTTGAGTAGGGGAAGGAATTCTTATATAAATCATATGTATATGGAGACTATGAGATGCTTGTTTAAGCAGATGGT GGATGATGGGGTCGAGCCTGATATTTTCTCTTTGAATTCCATGATAAAGGGCTATGCTCTTTCGTTGCATGTCAATGATGCTTTGAGAGTGTTCCATCAA ATGGGTGTGGTTTACAAGTGCTTGCCTAACTCATTTTCCTATGATTATCTGGTCCATGGATTATGTGCTCAAGGCCGAACAAATAATGCTAGAGAGTTGT TTGATGAAATGAAGGAAAAAGGATTTGTCCTAAGCAACAAGTCATTCAACTCACTTGTGAATGCTTTGGCTCTTGGTGGAGAAGTTGGGGAGGCAGTGAA TTATTTGTGGGAGATGATTGATAAGCATAGGTCAGTTGATTTAATCACATACAAGACAGTCTTGGATGAGATCTGCAGGCAAGGAAGGATTGGGGAGGCC ACGAGTTTGTTGAAGGAGTGGCAAGAAAAAGACCTTGTGGATGGGATAACTTACAGAGAGCTTCTACACGTGCTTGAAGATGACTTTGGAAATTCAAATG ACAGAGAACGTTTCAGGTATTGA
AA sequence Show only first row Show all	>Potri.018G093700.2 pacid=42801611 polypeptide=Potri.018G093700.2.p locus=Potri.018G093700 ID=Potri.018G093700.2.v4.1 annot-version=v4.1 MWEKKGAIGGDCLRYILSKKIFISPPSCINTFHSKNLAKFPFPILTQYSVISSYLNPTARKLKDVDLLAQTQILPSSNFSTFYSTKAPSRSFRKRNNKRA KANSRPILDEAKFQRSVSQLPSRFTNEELCNNITLEDDPLVCLELFNWASQQHRFRHDASTYHVTIKKLGIAKMYQEMDDVVNQLLAVPHIGNEALYNSI IYYFTEARKLTRAVNIFKRMKSSRNLDCRPSIKTYNILLTAMLSRGRNSYINHMYMETMRCLFKQMVDDGVEPDIFSLNSMIKGYALSLHVNDALRVFHQ MGVVYKCLPNSFSYDYLVHGLCAQGRTNNARELFDEMKEKGFVLSNKSFNSLVNALALGGEVGEAVNYLWEMIDKHRSVDLITYKTVLDEICRQGRIGEA TSLLKEWQEKDLVDGITYRELLHVLEDDFGNSNDRERFRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27800			Tetratricopeptide repeat (TPR)...		Potri.018G093700 [exp]	0	1
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.005G148500 [exp]	1.00	0.8907
AT5G04750			F1F0-ATPase inhibitor protein,...		Potri.010G240401 [exp]	2.44	0.8195
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Potri.007G072700 [exp]	3.87	0.8298
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.001G030000 [exp]	4.69	0.8491
AT1G71750		HGPT	Hypoxanthine-guanine phosphori...		Potri.005G198400 [exp]	5.19	0.8401
AT1G29040			unknown protein		Potri.011G064600 [exp]	11.22	0.7840
AT3G56830			Protein of unknown function (D...		Potri.002G146000 [exp]	11.31	0.8192
AT2G35320		ATEYA	EYES ABSENT homolog (.1)		Potri.001G144000 [exp]	13.26	0.7950
AT5G60750			CAAX amino terminal protease f...		Potri.001G097500 [exp]	13.26	0.8015
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.014G151200 [exp]	13.85	0.8301	TXR1.1

Compare expression of checked genes

Potri.018G093700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.