Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18840 288 / 1e-97 Integral membrane Yip1 family protein (.1) AT4G30260 288 / 2e-97 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G169200 [exp] 319 / 1e-109 AT4G30260 353 / 2e-123 Integral membrane Yip1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025478 [exp] 312 / 4e-107 AT2G18840 392 / 8e-139 Integral membrane Yip1 family protein (.1) Lus10006966 [exp] 299 / 2e-101 AT2G18840 379 / 3e-133 Integral membrane Yip1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [poplar] [flax] Yip1 PF04893 [poplar] [flax] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Potri.018G093800.1 pacid=42802167 polypeptide=Potri.018G093800.1.p locus=Potri.018G093800 ID=Potri.018G093800.1.v4.1 annot-version=v4.1 ATGTCGCACAACAGCGACACGATCCCTCTCCACGCATCTTCTCAATCAGACATCGACGAGATCGAGAACCTAATCAACTCCTCCATCCAATCCAGTCCTT CAACAGTCCTACCCGCCCGCCCACCAAGCCCGCCCCGAATACCCGTATCCGCTTCTCCCTTCATCCAATCAAATCTCCCTCCACCTCAACCGAAACCACA ACCCACCATCCAGAAACCGCCATCCATCTTCCCTTCCGCCCCTCTACCTCCTCTCCCACCTAGCTCTGGCAACTCTGCCGGTGGCAATTTTTCTGCAGCC GGGTTCGGGTCCCCTCCGAACACGTTGACGGAGCCAGTTTGGGATACCGTAAAAAGAGATCTTTCTAGGATTGTGAGTAATTTGAAGCTGGTTGTGTTTC CTAACCCGTATCGAGAAGATCCGGGAAAGGCTTTGAGAGATTGGGATCTGTGGGGTCCCTTTTTCTTTATCGTCTTTCTGGGACTCACTCTTTCTTGGTC CGCTTCTGTTAAAAAGTCTGAGGTGTTTGCTGTTGCATTTGCACTGCTTGCAGCTGGTGCTGTAATCTTGACACTGAACGTCCTGCTGCTGGGTGGACAC ATAATTTTCTTCCAAAGTCTGAGCCTATTGGGTTACTGTCTCTTTCCTCTAGACGTTGGAGCTCTCGTCTGCATGTTGAAGGACAATGTAATAATAAAAG TGATTGTAGTATCTGTGGCACTGGCTTGGAGCTCGTGGGCTGCCTATCCTTTCATGAGTTCAGCTGTCAACCCAAGAAGAAAGGCTCTTTCACTTTACCC TGTATTTCTGATGTATGTATCAGTTGGTTTTCTCATCATCGCCATTGATTGA
AA sequence Show only first row Show all	>Potri.018G093800.1 pacid=42802167 polypeptide=Potri.018G093800.1.p locus=Potri.018G093800 ID=Potri.018G093800.1.v4.1 annot-version=v4.1 MSHNSDTIPLHASSQSDIDEIENLINSSIQSSPSTVLPARPPSPPRIPVSASPFIQSNLPPPQPKPQPTIQKPPSIFPSAPLPPLPPSSGNSAGGNFSAA GFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGH IIFFQSLSLLGYCLFPLDVGALVCMLKDNVIIKVIVVSVALAWSSWAAYPFMSSAVNPRRKALSLYPVFLMYVSVGFLIIAID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18840			Integral membrane Yip1 family ...		Potri.018G093800 [exp]	0	1
AT4G30260			Integral membrane Yip1 family ...		Potri.006G169200 [exp]	1.00	0.9313
AT3G08640			Protein of unknown function (D...		Potri.016G140700 [exp]	3.60	0.8865
AT1G08700		PS1	Presenilin-1 (.1)		Potri.013G067700 [exp]	4.69	0.8890
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.006G104400 [exp]	5.19	0.9145
AT5G64090			unknown protein		Potri.003G020500 [exp]	5.47	0.8844
AT4G24330			Protein of unknown function (D...		Potri.004G223000 [exp]	9.05	0.8637
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.011G125500 [exp]	9.16	0.8771
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.003G162200 [exp]	9.16	0.9123
					Potri.009G092300 [exp]	10.19	0.9163	AGP9.1
AT4G22320			unknown protein		Potri.011G023200 [exp]	13.63	0.8543

Compare expression of checked genes

Potri.018G093800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.