Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57500 493 / 3e-177 Galactosyltransferase family protein (.1) AT3G06440 61 / 4e-10 Galactosyltransferase family protein (.1.2) AT1G27120 44 / 9e-05 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G131000 [exp] 316 / 5e-107 AT5G57500 289 / 2e-96 Galactosyltransferase family protein (.1) Potri.010G151600 [exp] 54 / 1e-07 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.008G086900 [exp] 44 / 9e-05 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.010G168500 [exp] 44 / 0.0002 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.012G072400 [exp] 42 / 0.0004 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 42 / 0.0005 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006963 [exp] 446 / 1e-158 AT5G57500 470 / 2e-168 Galactosyltransferase family protein (.1) Lus10019998 [exp] 433 / 2e-153 AT5G57500 475 / 3e-170 Galactosyltransferase family protein (.1) Lus10015527 [exp] 432 / 3e-153 AT5G57500 473 / 2e-169 Galactosyltransferase family protein (.1) Lus10000372 [exp] 300 / 2e-101 AT5G57500 300 / 2e-101 Galactosyltransferase family protein (.1) Lus10000407 [exp] 211 / 3e-68 AT5G57500 211 / 2e-68 Galactosyltransferase family protein (.1) Lus10006531 [exp] 201 / 3e-64 AT5G57500 202 / 1e-64 Galactosyltransferase family protein (.1) Lus10025474 [exp] 156 / 9e-47 AT5G57500 199 / 4e-64 Galactosyltransferase family protein (.1) Lus10032650 [exp] 55 / 3e-08 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10043102 [exp] 48 / 8e-06 AT3G06440 575 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.018G094000.1 pacid=42800500 polypeptide=Potri.018G094000.1.p locus=Potri.018G094000 ID=Potri.018G094000.1.v4.1 annot-version=v4.1 ATGAAGAGCACCTCAAAGCCAGACCGGCACCGATTCATCCTCTCCTCTTTATTCTTCATCTTCTTCTTGTGTGCCTTGGCTACCATCAATGGAATCCGAT TTGATAGCTTGTTAAGTTTTGGTAGATGTGCTCTCTCCAACATTCCATCTCAATCCTCCGCTCCATCTTCTAACAATTTTCTTGCCATGAATTCTTCAAC CTCTAGTGATGATATTCGCATACTTATAGGCGTTCTAACACTTCCCGATCAATACCAACGTCGACATTTTCTGCGTCTCATATATGGCACCCAATCTCCG GTGGGAGCACAGATTGATGTGAAGTTTGTGTTTTGCAATCTAACCAAGGAAGACCAAAAGGTACTTGTTGCTCTTGAGATAATGAGATATGATGATATTA TCATCCTGGATTGCAAGGAGAACATGAACAAAGGTAAAACCTACACTTACTTTTCAAGCTTGCCAGAAATGCTGAATGACACAGATAAACCTTATCCTCC TTATCATTATGTCATGAAAACCGACGATGACACATATTTCCGGTTAGATAATTTAGTGGAGTCGTTAAAACCATTGCCCAGAGAAGATTTGTACTATGGT TATGTTATCCCATGCCCTAGCATGGACCCTTTTGTGCATTATATGTCTGGTATGGGATACATGATCTCATGGGATATTGTAGAGTGGATTAGAGATTCAG AGGTGCCAAAAAATCATTTGGAAGGCCCGGAGGATAAAGTTTTTGGTGATTGGATCCGAGAAGGCCACCGTGCAAAGAATAGGTATAATGCTAAGTGGTC TATGTACAATTTTCCTGAGCCGCCCACACAATGCACACATGAGCTTTGGCCAAATACAACTGCGGTTCATCTGCTGAAGAATCAAGAGAAGTGGATCCAG ACATTGAAGTATTTTAATGTTACTAGTAATCTCAAACCTTCCAAATTGTATCATATACCTTAG
AA sequence Show only first row Show all	>Potri.018G094000.1 pacid=42800500 polypeptide=Potri.018G094000.1.p locus=Potri.018G094000 ID=Potri.018G094000.1.v4.1 annot-version=v4.1 MKSTSKPDRHRFILSSLFFIFFLCALATINGIRFDSLLSFGRCALSNIPSQSSAPSSNNFLAMNSSTSSDDIRILIGVLTLPDQYQRRHFLRLIYGTQSP VGAQIDVKFVFCNLTKEDQKVLVALEIMRYDDIIILDCKENMNKGKTYTYFSSLPEMLNDTDKPYPPYHYVMKTDDDTYFRLDNLVESLKPLPREDLYYG YVIPCPSMDPFVHYMSGMGYMISWDIVEWIRDSEVPKNHLEGPEDKVFGDWIREGHRAKNRYNAKWSMYNFPEPPTQCTHELWPNTTAVHLLKNQEKWIQ TLKYFNVTSNLKPSKLYHIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57500			Galactosyltransferase family p...		Potri.018G094000 [exp]	0	1
AT5G60700			glycosyltransferase family pro...		Potri.004G212000 [exp]	1.73	0.9583
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067300 [exp]	2.44	0.9361
AT5G50080	AP2_ERF	ERF110	ethylene response factor 110 ...		Potri.002G065600 [exp]	4.00	0.9374
AT5G60700			glycosyltransferase family pro...		Potri.009G010900 [exp]	4.89	0.9418
AT1G03220			Eukaryotic aspartyl protease f...		Potri.002G054900 [exp]	5.19	0.9242
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.011G112400 [exp]	6.32	0.9260
AT3G18950			Transducin/WD40 repeat-like su...		Potri.009G109500 [exp]	6.92	0.9145
AT2G15780			Cupredoxin superfamily protein...		Potri.009G106000 [exp]	7.48	0.9122
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.005G081300 [exp]	10.48	0.9215
AT3G20340			unknown protein		Potri.011G003100 [exp]	12.04	0.9366

Compare expression of checked genes

Potri.018G094000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.