Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	4CL1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21240 807 / 0 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 771 / 0 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT1G65060 726 / 0 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 671 / 0 4CL5 4-coumarate:CoA ligase 5 (.1) AT4G05160 409 / 2e-137 AMP-dependent synthetase and ligase family protein (.1) AT1G62940 360 / 4e-118 ACOS5 acyl-CoA synthetase 5 (.1) AT1G20510 353 / 2e-115 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 342 / 1e-110 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 338 / 2e-109 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 336 / 1e-108 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G169700 [exp] 1004 / 0 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.001G036900 [exp] 821 / 0 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G188500 [exp] 794 / 0 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 752 / 0 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.017G112800 [exp] 396 / 3e-132 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 393 / 6e-131 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G055700 [exp] 390 / 4e-129 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.002G012800 [exp] 379 / 3e-125 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 375 / 1e-123 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026143 [exp] 816 / 0 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10005390 [exp] 798 / 0 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10008677 [exp] 797 / 0 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10024123 [exp] 787 / 0 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10021431 [exp] 395 / 7e-132 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 395 / 8e-132 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 380 / 4e-126 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 362 / 6e-119 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 350 / 4e-114 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10025842 [exp] 346 / 2e-112 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G094200.1 pacid=42800651 polypeptide=Potri.018G094200.1.p locus=Potri.018G094200 ID=Potri.018G094200.1.v4.1 annot-version=v4.1 ATGGAGGCCAATAAGGATCAAGTACAAGAATTCATTTTCAGGTCCAAACTCCCTGATATCTATATCCCAAACCACCTACCTTTACACACTTATTGCTTCG AAAAGCTTTCCCAATTCAAAGACTACCCTTGCTTGATCAATGGCCCTACCGGTGATATCTACACTTATGCGGATGTTGAGCTCACATCACGCAAAGTTGC CTCTGGCCTCTACAAGTTAGGCGTCCAACAAGGCGATGTTATATTGCTCTTGCTCCAAAACTCGCCAGAATTTGTTTTTGCATTGCTTGGAGCGTCGTTC ATTGGCGCTATTAGCTCAACTGCAAACCCTTTCTATACTTCAGCTGAGATCGCAAAACAAGCAACAGCATCAAAGGCAAAGCTGATAATAACACAAGCAG CTTACGCCGAGAAAGTGCAACAGTTTGCTCAAGAAAATGATCATGTTAAGATAATGACCATCGATTCTCTTACAGAAAACTGCTTGCATTTCTCAGAGTT GACAAGCTCTGATGAGAATGAAATCCCTGCTGTCAAGATTAAGCCTGATGATGTCGTGGCACTCCCTTATTCGTCAGGGACTACAGGTCTCCCTAAAGGT GTCATGTTGACTCATAAAGGGCTTGTTACTAGTGTGGCACAACAAGTTGATGGAGAGAACCCTAATCTCTATTTTCACGAGAGGGATGTGATTCTTTGTG TGCTGCCTTTGTTCCACATCTATTCACTCAATTCCGTATTACTTTGTGGGCTAAGAGCTGGTTCAGCAATTTTGCTTATGCAAAAATTCGAGACGGTTTC ATTAATGGACCTTGTACAGAAATACAAGGTGACAATTGCTCCACTCGTGCCCCCTATCTTTCTGGCAATTGCAAAAAGTCCAGTCGTTGATCAGTATGAT CTTTCTTCGATCCGGACAGTACTGTCTGGCGCAGCACCGATGGGGAAGGAGCTTGAGGATACAGTCAGAGCTAAGCTGCCTAATGCTAAACTTGGACAGG GATATGGAATGACAGAGGCAGGGCCCGTGATAGCAATGTGCTTAGCTTTTGCAAAGGAACCCTTTGAGATTAAATCTGGCGCATGTGGGACTGTTGTTAG AAATGCAGAGATGAAGATTGTCGACCCGGAAACCGGTGACTCCCAACCGCGAAATAAAGCCGGCGAGATTTGCATTAGGGGTTGCCAAATAATGAAAGGT TATCTAAATGATACTGAGGCCACTGAAAGGACGATAGACAAAGATGGATGGTTGCACACGGGAGATGTTGGATACATTGATGAAGATGAACTCTTTATCG TGGATCGTTTGAAAGAATTGATCAAATACAAAGGTTTTCAAGTAGCACCTGCTGAGCTTGAAGCAATGTTGATTGCTCATCCCAACATCTCTGATGCTGC TGTAGTACCCATGAAAGATGAAGCTGCCGGAGAGGTTCCGGTTGCTTTTGTGGTGCGATCAAATGGTTCCAAGATCACCGAGGATGAAATCAAACAATAT ATCTCAAAACAGGTGATCTTTTATAAGAGAATCGGCCGGGTTTTCTTCACGGAGGCCATCCCCAAGGCCCCATCGGGAAAAATCTTGAGAAAAGACCTCA GAGCAAGGGTTGCAGCTGGTGATATTCCACATCAGATTCCTAGTACGACATATATGCAAAACCAGCATTAG
AA sequence Show only first row Show all	>Potri.018G094200.1 pacid=42800651 polypeptide=Potri.018G094200.1.p locus=Potri.018G094200 ID=Potri.018G094200.1.v4.1 annot-version=v4.1 MEANKDQVQEFIFRSKLPDIYIPNHLPLHTYCFEKLSQFKDYPCLINGPTGDIYTYADVELTSRKVASGLYKLGVQQGDVILLLLQNSPEFVFALLGASF IGAISSTANPFYTSAEIAKQATASKAKLIITQAAYAEKVQQFAQENDHVKIMTIDSLTENCLHFSELTSSDENEIPAVKIKPDDVVALPYSSGTTGLPKG VMLTHKGLVTSVAQQVDGENPNLYFHERDVILCVLPLFHIYSLNSVLLCGLRAGSAILLMQKFETVSLMDLVQKYKVTIAPLVPPIFLAIAKSPVVDQYD LSSIRTVLSGAAPMGKELEDTVRAKLPNAKLGQGYGMTEAGPVIAMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPETGDSQPRNKAGEICIRGCQIMKG YLNDTEATERTIDKDGWLHTGDVGYIDEDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQY ISKQVIFYKRIGRVFFTEAIPKAPSGKILRKDLRARVAAGDIPHQIPSTTYMQNQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.018G094200 [exp]	0	1	4CL1.4
AT5G61520			Major facilitator superfamily ...		Potri.016G120700 [exp]	2.44	0.8655
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	5.09	0.9148
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126201 [exp]	7.00	0.8650
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.014G155100 [exp]	7.74	0.9069
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023700 [exp]	8.83	0.8816
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.003G139850 [exp]	14.83	0.8599
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023964 [exp]	15.74	0.8749
AT3G59430			unknown protein		Potri.007G128500 [exp]	17.83	0.7884
AT4G20800			FAD-binding Berberine family p...		Potri.001G459200 [exp]	22.51	0.8537
AT5G38260			Protein kinase superfamily pro...		Potri.010G121350 [exp]	22.91	0.8663

Compare expression of checked genes

Potri.018G094200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.