Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25830 128 / 9e-38 Uncharacterised protein family (UPF0497) (.1) AT2G35760 66 / 2e-13 Uncharacterised protein family (UPF0497) (.1) AT4G16442 65 / 3e-13 Uncharacterised protein family (UPF0497) (.1) AT5G44550 41 / 0.0002 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G016900 [exp] 71 / 3e-15 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 69 / 1e-14 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.008G205000 [exp] 46 / 2e-06 AT3G06390 130 / 4e-38 Uncharacterised protein family (UPF0497) (.1) Potri.001G442300 [exp] 41 / 0.0002 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019999 [exp] 125 / 5e-36 AT4G25830 154 / 2e-47 Uncharacterised protein family (UPF0497) (.1) Lus10015528 [exp] 95 / 5e-24 AT4G25830 108 / 2e-29 Uncharacterised protein family (UPF0497) (.1) Lus10039060 [exp] 71 / 2e-15 AT2G35760 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1) Lus10038800 [exp] 68 / 4e-14 AT2G35760 243 / 2e-82 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.018G094500.1 pacid=42801151 polypeptide=Potri.018G094500.1.p locus=Potri.018G094500 ID=Potri.018G094500.1.v4.1 annot-version=v4.1 ATGGCGCTGGAGATACCCAAAATAGAGGCTATTCTAAGAGGTATTGCTATATTGCTCTTAGTTTCAACAGCTTGTTTAGTAGGTTTAGATTCTCAAACCA AGTTTGTAATAGTCTATGAAAAGGAAGTTACCTACAAGGACTTGCACGCTCTTGTAGTTTTGGTGTATGTGGATGCTGTAGCTGCTGCTTACAATCTGCT TCAGCTATGTAGATGCTCTGTGTCAGCGTTGAGTAAAGGAAACTTCAAGGGATCTTACAGATATCTGTCCTGGGCATGTTTCGTATTGGACCAGTTAGCA GCGTACACTACGTTCGCAGCACACTCAGCAGCACTTCAGCACTCAGTTCTAGGCATTACCGGTGCAAAGGTCTTTCAATGGATGAAGTGGTGCAATAGAT TCACAAGATTCTGCTTCCAAATCGGCGGCGCTTTGACATGTGGTTACATAGCATCTGTGCTTATGGTCATGATATCATTCATCTCAGCCTTCAATTTGTT TAGGCTCTATTCACCAAAACACTTTCTTCGCTTAAAGGGGACATAG
AA sequence Show only first row Show all	>Potri.018G094500.1 pacid=42801151 polypeptide=Potri.018G094500.1.p locus=Potri.018G094500 ID=Potri.018G094500.1.v4.1 annot-version=v4.1 MALEIPKIEAILRGIAILLLVSTACLVGLDSQTKFVIVYEKEVTYKDLHALVVLVYVDAVAAAYNLLQLCRCSVSALSKGNFKGSYRYLSWACFVLDQLA AYTTFAAHSAALQHSVLGITGAKVFQWMKWCNRFTRFCFQIGGALTCGYIASVLMVMISFISAFNLFRLYSPKHFLRLKGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25830			Uncharacterised protein family...		Potri.018G094500 [exp]	0	1
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255800 [exp]	1.41	0.9713
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.007G139501 [exp]	1.41	0.9726
					Potri.004G050600 [exp]	3.00	0.9661
					Potri.004G050700 [exp]	6.00	0.9474
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G119600 [exp]	9.38	0.9562
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128200 [exp]	9.74	0.9579
AT5G66600			Protein of unknown function, D...		Potri.009G111100 [exp]	9.94	0.9554
AT3G15570			Phototropic-responsive NPH3 fa...		Potri.003G058800 [exp]	10.39	0.9593
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Potri.017G061600 [exp]	13.85	0.9269	FBL4,IPS1.1
					Potri.006G132951 [exp]	14.83	0.9300

Compare expression of checked genes

Potri.018G094500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.