Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57580 820 / 0 Calmodulin-binding protein (.1) AT2G18750 798 / 0 Calmodulin-binding protein (.1.2.3) AT4G25800 767 / 0 Calmodulin-binding protein (.1.2) AT2G24300 583 / 0 Calmodulin-binding protein (.1.2) AT4G31000 491 / 1e-167 Calmodulin-binding protein (.1.2) AT5G62570 323 / 2e-103 Calmodulin binding protein-like (.1.2) AT1G73805 295 / 2e-93 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 248 / 8e-74 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035100 [exp] 842 / 0 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 840 / 0 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 799 / 0 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.018G111200 [exp] 637 / 0 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.006G187900 [exp] 636 / 0 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.015G071800 [exp] 379 / 6e-124 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 364 / 2e-118 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.015G045300 [exp] 340 / 3e-110 AT1G73805 414 / 1e-141 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.012G054900 [exp] 336 / 4e-109 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001436 [exp] 843 / 0 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 835 / 0 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10011248 [exp] 755 / 0 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 753 / 0 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10019056 [exp] 605 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10036301 [exp] 597 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10020686 [exp] 319 / 3e-100 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10029861 [exp] 314 / 2e-98 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10034121 [exp] 309 / 1e-97 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10043463 [exp] 256 / 1e-75 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [poplar] [flax] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Potri.018G095300.2 pacid=42801739 polypeptide=Potri.018G095300.2.p locus=Potri.018G095300 ID=Potri.018G095300.2.v4.1 annot-version=v4.1 ATGCACACTAGGTATATGGAGAGAACTAATAGCATGGCTAGAAGGAAAAGGGGCTTAGAAGGTGGTGGAGCAGAGGAGGGGGAGCAGCAGCAGCAGCAGC AGCCAGAGCGTAAAAGACCTGCTTTAGCTAGTGTAATTGTAGAAGCTCTCAAGGTGGATAGTCTACAGAAGCTCTGCTCATCGTTGGAACCAATTCTTCG TAGAGTTGTAAGTGAGGAAGTGGAGCGTGCTTTAGCAAAGATAGGTCCTGCTAGACAGATTGGAAGGTCTTCCCCGAAGCGAATTGAAGGCCCAGATGGA AGGAACTTGCAGTTGCACTTTAGGTCTAGGTTGTCTCTTCCCCTTTTCACAGGAGGAAAAGTAGAGGGGGAGCAGGGTGCCGCAATCCATGTTGTTTTGG TTGATGCGAGCACTGGACATGTTGTAACTTCTGGCACAGAAGCCTCTGTAAAACTAGATGTTGTAGTTCTTGAAGGTGATTTCAACAATGAAGCTGATGA AGGCTGGACACAAGAAGAATTTGAAAGCCATGTTGTAAAAGAGCGTGAAGGAAAGAGACCATTGTTGACTGGAGACTTGCAAGTAACACTTAAAGAAGGG GTAGGATCTTTGGGAGATCTCACATTTACGGATAACTCAAGTTGGATAAGGAGCAGGAAGTTCAGGCTTGGCTTGAAGGTTGCTTCTGGGTATTCTGAGG GCATACACATTCGTGAGGCCAAGACAGAAGCTTTTACTGTTAAAGACCATAGAGGGGAATTATACAAGAAACACTATCCACCTGCACTGGATGATGATGT ATGGAGATTGGAGAAAATTGGCAAGGATGGTTCATTCCACAAGAGGCTAAATAATCAAGGAATATTTAAAGTTGAAGACTTCCTTCGTCTTGCAGTCAAA GATTCTCAGAAATTACGGAATATTCTGGGAGGTGGCATGTCAAATAAGATGTGGGATGCTCTCTTGGAGCATGCAAAGACTTGCGTTCTTAGCGGAAAAC TATATGTTTATTATCCTGACAATTCAAGAAATGTTGGTGCTGTCTTCAACAACATCTTTGAGCTGAATGGCCTTATTTCAGAGGAACAGTATTATGCAGC CAATTCCCTTTCTGATGAGCAAAAGATCTATGTGGATACATTGGTGAAGAAAGCATATGACAATTGGGATATGGTCGTTGAGTATGATGGCAAGTCACTT CTGAACTTCAATCAAAATAGGAGGGTAAGTGTATCCCAAAATGAACATCAGATCAATCAAATAGGTTACTCTAATCCTTCAGGCCACCAAGTGCAATTAC CACGCTTGCCAGCTTCAATTCCAACCGAGCAGTCTTCTGTTCATTCAGCCCTACAAGCAGGAGGGTACAATGATAATTTGGTATCGGGATACTCAATGCA GTCACAGCTTGTAAATCCTGATTCCCGCACACAGCTTGGCAGTAACTCATTCGCACCACATCAACAACTGATCAGCAATCCTCAACAACTCCTAAGCACT AGAAATGATAACAGTGCTGTTGGCCTGGCCCTTGGTCCTCCACAGTCATCTACCTCAGGTTTTCAAACAATTGGTTCTTCCATGCAGCCAACTAATCTTA ATCCTTTTGATGACTGGACCAGCAACCGAGACAAGAGCGCTGACGAATTCTTTTCAGAGGAAGAGATTCGCATACGAAGTCATGAGATGCTTGAGAATGA AGATATGCAACACTTGCTCCGACTCTTCAGTATGGGGGGCCATGCCAATGTACCTGAAGATGGCTTTTCTTACCCACCTTACATGGCATCTCCTATGCCA AATTATGACGAGGACCGCTCACGTCCAGGTAAAGCTGTTGTGGGATGGTTGAAGATCAAGGCAGCAATGAGGTGGGGGTTCTTTATTAGGAAGAAAGCTG CTGAGAGGCGAGCACAGCTTGTTGAGCTGGATGATGATGATGAGTAG
AA sequence Show only first row Show all	>Potri.018G095300.2 pacid=42801739 polypeptide=Potri.018G095300.2.p locus=Potri.018G095300 ID=Potri.018G095300.2.v4.1 annot-version=v4.1 MHTRYMERTNSMARRKRGLEGGGAEEGEQQQQQQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIGPARQIGRSSPKRIEGPDG RNLQLHFRSRLSLPLFTGGKVEGEQGAAIHVVLVDASTGHVVTSGTEASVKLDVVVLEGDFNNEADEGWTQEEFESHVVKEREGKRPLLTGDLQVTLKEG VGSLGDLTFTDNSSWIRSRKFRLGLKVASGYSEGIHIREAKTEAFTVKDHRGELYKKHYPPALDDDVWRLEKIGKDGSFHKRLNNQGIFKVEDFLRLAVK DSQKLRNILGGGMSNKMWDALLEHAKTCVLSGKLYVYYPDNSRNVGAVFNNIFELNGLISEEQYYAANSLSDEQKIYVDTLVKKAYDNWDMVVEYDGKSL LNFNQNRRVSVSQNEHQINQIGYSNPSGHQVQLPRLPASIPTEQSSVHSALQAGGYNDNLVSGYSMQSQLVNPDSRTQLGSNSFAPHQQLISNPQQLLST RNDNSAVGLALGPPQSSTSGFQTIGSSMQPTNLNPFDDWTSNRDKSADEFFSEEEIRIRSHEMLENEDMQHLLRLFSMGGHANVPEDGFSYPPYMASPMP NYDEDRSRPGKAVVGWLKIKAAMRWGFFIRKKAAERRAQLVELDDDDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57580			Calmodulin-binding protein (.1...		Potri.018G095300 [exp]	0	1
AT4G26450		WIP1	unknown protein		Potri.001G472600 [exp]	8.00	0.7959
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	11.35	0.8114
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	13.78	0.8178
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	13.85	0.7875
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.012G118300 [exp]	15.19	0.7327
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	16.15	0.7938
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.016G023800 [exp]	16.43	0.7832
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.014G164300 [exp]	17.49	0.8148
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Potri.014G137700 [exp]	18.43	0.7934
AT4G13780			methionine--tRNA ligase, putat...		Potri.001G317500 [exp]	19.97	0.7990

Compare expression of checked genes

Potri.018G095300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.