Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30310 989 / 0 FGGY family of carbohydrate kinase (.1.2.3) AT1G80460 50 / 3e-06 GLI1, NHO1 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030900 [exp] 47 / 3e-05 AT1G80460 833 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006975 [exp] 952 / 0 AT4G30310 927 / 0.0 FGGY family of carbohydrate kinase (.1.2.3) Lus10001312 [exp] 768 / 0 AT4G30310 758 / 0.0 FGGY family of carbohydrate kinase (.1.2.3) Lus10024516 [exp] 100 / 7e-25 AT4G30310 94 / 7e-24 FGGY family of carbohydrate kinase (.1.2.3) Lus10035914 [exp] 69 / 5e-12 AT1G80460 845 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2) Lus10025750 [exp] 47 / 5e-05 AT1G80460 760 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00370 [poplar] [flax] FGGY_N FGGY family of carbohydrate kinases, N-terminal domain CL0108 [poplar] [flax] Actin_ATPase PF02782 [poplar] [flax] FGGY_C FGGY family of carbohydrate kinases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G095700.2 pacid=42801355 polypeptide=Potri.018G095700.2.p locus=Potri.018G095700 ID=Potri.018G095700.2.v4.1 annot-version=v4.1 ATGTCTGGTTTAAGAAGGCCGTGGTCCGATAATTCTCCTCTATTGTCCTCACGTAAAGAAAAACAACATACCTCCCCTGTCTCCTGCTCCTCCCCCTCCT CTCCTTCCTCAGTCGAAATGTCAACCGCCGCCGCAACCACCACTCCTCGCCGCTCCATCTTCCTTGGCGTCGACGTCGGCACCGGGAGCGCCCGCGCTGG CCTGTTTGATGAGAGTGGAAAACTTCTGGGGTCTGCTAGTAGTCCTATACAAATATGGAAAGAAGGTGACTGTGTTGAGCAATCTTCGACAGATATTTGG CATGCCATATGTGCCGCTGTGAAATCTGCGTGCTCCCTTGCAAATGTTTCAGGGAATGAAGTGACAGGGATGGGATTCGCGGCTACTTGTTCTCTTGTTG CGGTCGATGCTGATGGAAGCCCTGTTACAGTTTCCTGGAGTGGTGATTCAAGACGGAATGTTATAGTATGGATGGATCACAGAGCTGTTAAACAAGCTGA AAAGATCAATTCTTCTAACTCACCAGTATTGCAATATTGTGGTGGAGCTCTTTCTCCTGAAATGGAGCCACCAAAGCTTTTATGGGTGAAAGAAAATTTG CCAGAATCTTGGTCGATGGTGTTTAGATGGATGGACTTGAGTGATTGGTTGTCATACAGAGCAACTGGAGATGATACTCGGAGTCTGTGCACAACAGTAT GCAAATGGACTTATCTTGGTCATGCACACATGCAGCAGTTGAATGGGAAAGATTCCCGCAACATGGAAACTTGTGGATGGGATGATGATTTTTGGGAAGA GATTGGCTTAGGTGATCTTGTTGATGGGCATCATGCTAAAATTGGACGAAGTGTAGCTTTCCCTGGTCATCCTTTGGGTTCTGGTTTAACTCCTACAGCT GCACAGGAACTGGGTCTTGTGGCAGGAACACCTGTGGGGACTTCACTGATAGATGCTCATGCTGGTGGTGTGGGGATAATGGAAAGTGTCCCCGAGTTAG GTTCTGAAGCTAAAGAGAATGATAATGAAGCTATATGTCATCGTATGGCATTAATCTGCGGTACTTCTACCTGTCATATGGCCGTGTCCCGAAACAAGCT ATTTATTCCTGGGGTCTGGGGACCGTTTTGGTCAGCGATGATACCTGAGTACTGGCTTACAGAAGGTGGACAGAGTGCTACTGGTGCATTATTAGATTAT ATAATTGAAAATCATGCTGCTTCTCCCAGACTTGCAAATCGTGCTGCTTCTTTAAAAATATCCATGTTTGAACTACTGAGCAATACAATCAAGACAATGA TAGATGAACTGAAGTCTCCATTCCTTGCTGCTTTGACTGAACATATACATGTCCTTCCTGATTTTCATGGAAATAGGTCTCCCATTGCAGATCCAAAATC CAAAGGAATTGTTTTTGGCCTGACTCTAGAAACGAGTGAGAGACAGTTGGCTCTTTTATACCTTGCTACCGTACAGGGTATTGCATATGGTACACGTCAC ATTGTGGAGCACTGCAATGCTCATGGTCATAAAATCGATACATTACTTGCATGTGGTGGCCTCTCAAAGAACTCCCTCTACATCCAAGAACATGCAGATA TCCTTGGTTGCCCTATTGTACTTCCACGAGAAAGTGAATCTGTGCTCTTGGGTGCTGCTATTCTTGGTGCCGTTGCTTCAAAGAAATACTCAAGTCTTAC TGAGGCCATGAAGGCGCTGAATGCAGCTGGTCAGGTCATTCATCCATCAAAAAACCCAAAGGTGAAGAAGTATCATGATGCCAAATATCGTATTTTCCAT GATCTCTATGAGCAGCAGCTCTCTCAGCGTTCTATCATGGCTCAAGCCTTGGAGTAG
AA sequence Show only first row Show all	>Potri.018G095700.2 pacid=42801355 polypeptide=Potri.018G095700.2.p locus=Potri.018G095700 ID=Potri.018G095700.2.v4.1 annot-version=v4.1 MSGLRRPWSDNSPLLSSRKEKQHTSPVSCSSPSSPSSVEMSTAAATTTPRRSIFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCVEQSSTDIW HAICAAVKSACSLANVSGNEVTGMGFAATCSLVAVDADGSPVTVSWSGDSRRNVIVWMDHRAVKQAEKINSSNSPVLQYCGGALSPEMEPPKLLWVKENL PESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQLNGKDSRNMETCGWDDDFWEEIGLGDLVDGHHAKIGRSVAFPGHPLGSGLTPTA AQELGLVAGTPVGTSLIDAHAGGVGIMESVPELGSEAKENDNEAICHRMALICGTSTCHMAVSRNKLFIPGVWGPFWSAMIPEYWLTEGGQSATGALLDY IIENHAASPRLANRAASLKISMFELLSNTIKTMIDELKSPFLAALTEHIHVLPDFHGNRSPIADPKSKGIVFGLTLETSERQLALLYLATVQGIAYGTRH IVEHCNAHGHKIDTLLACGGLSKNSLYIQEHADILGCPIVLPRESESVLLGAAILGAVASKKYSSLTEAMKALNAAGQVIHPSKNPKVKKYHDAKYRIFH DLYEQQLSQRSIMAQALE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30310			FGGY family of carbohydrate ki...		Potri.018G095700 [exp]	0	1
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.012G082700 [exp]	3.74	0.7820
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.001G105600 [exp]	6.00	0.7330	ATGSTT1.3
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.008G063900 [exp]	11.22	0.7810
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Potri.014G138000 [exp]	13.60	0.6652	Pt-ZCF61.1
AT3G44160			Outer membrane OMP85 family pr...		Potri.001G215500 [exp]	16.73	0.6757
AT4G35530			phosphatidylinositolglycan-rel...		Potri.018G026700 [exp]	23.13	0.6060
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.015G008300 [exp]	27.12	0.7352
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Potri.017G086500 [exp]	27.74	0.6030	CGS1.1
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.010G137100 [exp]	30.29	0.7025
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Potri.008G075800 [exp]	33.04	0.6217

Compare expression of checked genes

Potri.018G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.