Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17050 408 / 1e-139 UGT78D2 UDP-glucosyl transferase 78D2 (.1) AT1G30530 367 / 2e-123 UGT78D1 UDP-glucosyl transferase 78D1 (.1) AT5G17030 365 / 7e-123 UGT78D3 UDP-glucosyl transferase 78D3 (.1) AT5G17040 363 / 3e-122 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 196 / 3e-57 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 183 / 2e-52 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 179 / 8e-51 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT5G59580 175 / 1e-49 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT5G59590 174 / 3e-49 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G46680 173 / 9e-49 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G171100 [exp] 585 / 0 AT5G17050 392 / 2e-133 UDP-glucosyl transferase 78D2 (.1) Potri.006G171268 [exp] 582 / 0 AT5G17050 389 / 5e-132 UDP-glucosyl transferase 78D2 (.1) Potri.006G171156 [exp] 470 / 3e-165 AT5G17050 343 / 1e-115 UDP-glucosyl transferase 78D2 (.1) Potri.013G118700 [exp] 448 / 3e-155 AT5G17050 533 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.013G143900 [exp] 437 / 3e-151 AT5G17050 518 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.009G133300 [exp] 336 / 4e-111 AT5G17050 371 / 8e-125 UDP-glucosyl transferase 78D2 (.1) Potri.009G078400 [exp] 335 / 4e-111 AT5G17050 358 / 6e-120 UDP-glucosyl transferase 78D2 (.1) Potri.006G171128 [exp] 325 / 6e-110 AT5G17050 254 / 1e-82 UDP-glucosyl transferase 78D2 (.1) Potri.006G023700 [exp] 173 / 8e-49 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025854 [exp] 388 / 2e-131 AT5G17050 523 / 0.0 UDP-glucosyl transferase 78D2 (.1) Lus10024583 [exp] 168 / 1e-46 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 167 / 2e-46 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10040246 [exp] 165 / 1e-45 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 164 / 4e-45 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10025741 [exp] 164 / 5e-45 AT1G22380 525 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10035903 [exp] 163 / 8e-45 AT1G22360 522 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10031388 [exp] 163 / 1e-44 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 160 / 7e-44 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10021438 [exp] 160 / 9e-44 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.018G096000.2 pacid=42800598 polypeptide=Potri.018G096000.2.p locus=Potri.018G096000 ID=Potri.018G096000.2.v4.1 annot-version=v4.1 ATGTCAGAAGCAAAAAACGACTTGAAACACATTGCTGTGCTAGCATTCCCGTTTGCCACCCATGCTGCTCCCCTCTTTTCCCTCATTAGGAGGCTATCCA CGATGGCTCCGCAAGCGAAGTTTTCATTCTTTAGCACAAAAGAATCCAATAGCAAAATTTTCTCAAATCAAGGGCGGATGGAAAGCATAAAACCCTACAA TGTAAACGATGGTTTACCTGAGGATTACATGATTTCATTTGCAAATCCCCATGAGCCGGTTGAGTACTTTTTGAAGGCGGTCCCCGGGAATTTTAAGCAA GCCATGGAGGTGGCCGTGCAGGTTATTGGGAGGGAAATTACTTGCATCATCAGTGATGCATTCTTTTGGTTTGGGGCGGATATTGCACGCGAATTACACG TACCATGGGTGCCACTTTGGACTGCTGGACCTCGTCCCCTCCTTTTGCATCTTGAAACCGATCTAGTCCGCCAGAAAATGGGAGGCGATGGTAAGGTTTT TGATGGAGTACCGGAAGATAGAACCATGGACTTTCTTCCAGGTTTTTCTGAAATACGAGCTGCTGATATACCTAAAGAACTGCTCTATGAAGACGAAAAA CCAGGAATCCCAGCAATATTGTATAAAATGGGAAAAATGTTACCACGAGCAGCTGCTGGTGTATTAAGCTCGTGGGAGAAATTAGACCCTGATGTGGTGA ATCAGCTCCAGTCAAGACTTCATAATTTTCTTGAAGTTGGTCCCTTAGTGTTGACATCTCCAGATCCTGTTATGTCCGATCCACAATGTTGCCTAGAGTG GCTGGACAAGCAGAAACGAGGCTCAGTCTTGTACGTTTGTTTTGGAAGTATGATAATGCCACCACCTCATGAGTTAGCAGAGTTAGCAGAAGCACTAGAG GAATGCGATTCGCCATTTCTTTGGTCATTTAGAGACAATCCTGAGGCAAAATTGCCTGAAGGGTTCTTAGAAAGGACTAAGGAGAAGGGAAAAGTAGTCT CATGGACTCCACAGTTAAAAGTCTTGCAACACAATGCAACTGGAGTGTTTCTTACACATGCTGGATGGAATTCGATTTCAGAGAGTATTGTTGGATGCGT GCCCATGATTTGTAGGCCTTTCTTCGGGGATCAAGCCTTGAACACAAGGACTGTAGAGGCTATATGGAAAATTGGTGTTGGGATTGAAGGAGGGACGATA ACTAAAGATGGAGTAACCAAAGCTATAAAACTTATTTTGTCAACCGAAGAAGGAGAAAAAATGCGGAAGAACGTTGAACACCTCCAACATCTTGCTTTGG ATGCAGTGTCAAATGGCAGCTCTTCGAAAAACTTCGAAGCACTGCTAGTGGTTGTCACCAAGTAA
AA sequence Show only first row Show all	>Potri.018G096000.2 pacid=42800598 polypeptide=Potri.018G096000.2.p locus=Potri.018G096000 ID=Potri.018G096000.2.v4.1 annot-version=v4.1 MSEAKNDLKHIAVLAFPFATHAAPLFSLIRRLSTMAPQAKFSFFSTKESNSKIFSNQGRMESIKPYNVNDGLPEDYMISFANPHEPVEYFLKAVPGNFKQ AMEVAVQVIGREITCIISDAFFWFGADIARELHVPWVPLWTAGPRPLLLHLETDLVRQKMGGDGKVFDGVPEDRTMDFLPGFSEIRAADIPKELLYEDEK PGIPAILYKMGKMLPRAAAGVLSSWEKLDPDVVNQLQSRLHNFLEVGPLVLTSPDPVMSDPQCCLEWLDKQKRGSVLYVCFGSMIMPPPHELAELAEALE ECDSPFLWSFRDNPEAKLPEGFLERTKEKGKVVSWTPQLKVLQHNATGVFLTHAGWNSISESIVGCVPMICRPFFGDQALNTRTVEAIWKIGVGIEGGTI TKDGVTKAIKLILSTEEGEKMRKNVEHLQHLALDAVSNGSSSKNFEALLVVVTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.018G096000 [exp]	0	1
					Potri.004G021901 [exp]	4.24	0.8152
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Potri.007G083300 [exp]	7.34	0.7912
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.005G211300 [exp]	11.61	0.8138
					Potri.010G210400 [exp]	13.26	0.7528
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177600 [exp]	15.87	0.7775
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.004G199900 [exp]	18.16	0.7807
AT1G08440			Aluminium activated malate tra...		Potri.001G217300 [exp]	20.73	0.7956
AT1G58170			Disease resistance-responsive ...		Potri.016G060801 [exp]	22.51	0.7746
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.017G044900 [exp]	26.15	0.7693
AT3G10330			Cyclin-like family protein (.1...		Potri.015G067500 [exp]	28.72	0.7470	TFIIB1.1

Compare expression of checked genes

Potri.018G096000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.