Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25770 502 / 9e-178 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G10040 372 / 7e-127 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G51180 345 / 4e-117 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29120 276 / 9e-89 Hydrolase-like protein family (.1.2.3.4.5) AT1G09980 49 / 7e-06 Putative serine esterase family protein (.1.2) AT1G58350 45 / 7e-05 ZW18 Putative serine esterase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113000 [exp] 397 / 5e-136 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G079400 [exp] 357 / 8e-122 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G151300 [exp] 350 / 8e-119 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G065700 [exp] 279 / 1e-89 AT1G29120 580 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Potri.019G077700 [exp] 45 / 8e-05 AT1G58350 1036 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.013G104400 [exp] 44 / 0.0003 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001320 [exp] 503 / 4e-179 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10006982 [exp] 495 / 6e-175 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032496 [exp] 353 / 7e-120 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042993 [exp] 337 / 5e-113 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001893 [exp] 272 / 4e-87 AT1G29120 558 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10013909 [exp] 262 / 6e-83 AT1G29120 561 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10038351 [exp] 43 / 0.0004 AT1G09980 1025 / 0.0 Putative serine esterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05057 [poplar] [flax] DUF676 Putative serine esterase (DUF676)
Representative CDS sequence Show only first row Show all	>Potri.018G096035.1 pacid=42801086 polypeptide=Potri.018G096035.1.p locus=Potri.018G096035 ID=Potri.018G096035.1.v4.1 annot-version=v4.1 ATGATCGCCGCCGTCTCTCCACTCTCTCCACCCAAACACACTGCCGTTTTCATTCACACCACCAACCCTTTCTCCTTTCCTCTCCATTCAGGAGCGGATC CGGCCAAAATGGATTGGATACGGAAGAGGATGAATTTCAGGTGTTTTAATAAGAGAACTGACAGTAAAGTACTCAAGGTGGAGGTTGAAAGTGGCGGTGA GGATTTTATGGATGCAGCTGTTGCAGAGGCTAGGGTTTCGCCTCAGCATCTTGTTATCATGGTTAATGGTATTATTGGGAGTTCTGCAGATTGGAGATAT GCGGCAGATCAGTTTGTGAAAAAACTTCCTGACAAAATACTTGTGCATCGCAGTGAATGCAACCATTCAAAATTGACGTTTGATGGTGTTGATTTGATGG GTGACAGGCTAGCTGAAGAGGTATTGGCAGTTGTTAGACACAGGCCTGAGGTGCGGAAAATTTCCTTTGTGGCTCACTCACTAGGTGGACTTGTTGCAAG ATATGCTATAGCCAGGCTGTATGAAAATTTACCTAAATCAGCCCTTTCAAATCTCACTGAAAATTCCTTGGATGAAGAGCACACAAATTCAATGCACTGT CTTGAGCAGCCATGTGAAGCTAGAATTGCTGGATTGGAACCTGTGAACTTCATAACATTTGCAACACCTCATCTTGGTTCAAGGGGAAATAAACAGCTCC CTATTCTCTGTGGTCTTCCTTTCCTTGAGAGAAGAGCATCTCAGACTGCGCATTTAATAGTTGGAAGGACAGGAAAGCATCTGTTCCTAACAGACAATGA TAATGGGATACCTCTTCTTCTTCAAATGGTTAATGATTCTGATGGCTTAAGATTCATATCAGCTTTACGTGCATTCAAGCGTCGTGTGGTATATGCAAAT GCAAATTATGATCATATAGTTGGATGGGGAACATCATCAATTAGGCGTCAAAATGAACTTCCCAAGTCCAATCTTCTTGTGACAGATAATAAATATCCAC ATATTGTTTATGTGGAGAGAGAAAGAGTGGACCACAATTCTGATAAAAAAACTCTTGTTGTTGGAGAGCAAACAACTGATTTAGAAGAAGAGATGATCAA AGGACTGACTCAAGTACCTTGGGAACGTGTAGATGTTAGCTTTCATAAAAGCAAACAACGGTATATTGCTCACAATACCATTCAGGTGAAGTCGTATTGG TTGAATTCTGATGGTGCTGATGTGGTTTTCCACATGATAGATAATTTCCTTCTCTAG
AA sequence Show only first row Show all	>Potri.018G096035.1 pacid=42801086 polypeptide=Potri.018G096035.1.p locus=Potri.018G096035 ID=Potri.018G096035.1.v4.1 annot-version=v4.1 MIAAVSPLSPPKHTAVFIHTTNPFSFPLHSGADPAKMDWIRKRMNFRCFNKRTDSKVLKVEVESGGEDFMDAAVAEARVSPQHLVIMVNGIIGSSADWRY AADQFVKKLPDKILVHRSECNHSKLTFDGVDLMGDRLAEEVLAVVRHRPEVRKISFVAHSLGGLVARYAIARLYENLPKSALSNLTENSLDEEHTNSMHC LEQPCEARIAGLEPVNFITFATPHLGSRGNKQLPILCGLPFLERRASQTAHLIVGRTGKHLFLTDNDNGIPLLLQMVNDSDGLRFISALRAFKRRVVYAN ANYDHIVGWGTSSIRRQNELPKSNLLVTDNKYPHIVYVERERVDHNSDKKTLVVGEQTTDLEEEMIKGLTQVPWERVDVSFHKSKQRYIAHNTIQVKSYW LNSDGADVVFHMIDNFLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25770			alpha/beta-Hydrolases superfam...		Potri.018G096035 [exp]	0	1
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Potri.008G076900 [exp]	6.92	0.9179
AT3G55870			ADC synthase superfamily prote...		Potri.008G066600 [exp]	9.53	0.9201	Pt-ASA1.1,ASA%2C,pseudogene
AT3G20800			Cell differentiation, Rcd1-lik...		Potri.011G086800 [exp]	13.41	0.9089
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Potri.001G186000 [exp]	15.58	0.9092	Pt-TED3.2
AT3G59780			Rhodanese/Cell cycle control p...		Potri.019G098950 [exp]	15.96	0.9041
					Potri.012G008845 [exp]	18.00	0.9163
					Potri.012G007866 [exp]	20.61	0.9153
					Potri.012G007445 [exp]	26.98	0.9099
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G010800 [exp]	31.14	0.9092
AT3G13800			Metallo-hydrolase/oxidoreducta...		Potri.003G036800 [exp]	37.52	0.8154

Compare expression of checked genes

Potri.018G096035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.