Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57630 534 / 0 CIPK21, SnRK3.4 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) AT1G30270 437 / 1e-150 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT2G26980 434 / 8e-150 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 431 / 7e-149 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G01140 420 / 4e-144 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT4G24400 415 / 2e-142 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G35410 409 / 7e-140 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT3G17510 393 / 1e-133 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT1G48260 381 / 4e-129 CIPK17, SnRK3.21 SNF1-RELATED PROTEIN KINASE 3.21, CBL-interacting protein kinase 17 (.1) AT5G45820 374 / 2e-126 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G171400 [exp] 835 / 0 AT5G57630 549 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) Potri.001G222600 [exp] 451 / 1e-156 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 446 / 9e-155 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 446 / 3e-154 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.010G002500 [exp] 435 / 4e-150 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.018G119200 [exp] 433 / 6e-149 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G130500 [exp] 414 / 7e-142 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.014G104200 [exp] 410 / 2e-140 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 403 / 1e-137 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042816 [exp] 439 / 1e-151 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 437 / 7e-151 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10019411 [exp] 416 / 2e-142 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10030210 [exp] 403 / 1e-137 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10022590 [exp] 400 / 6e-137 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10002692 [exp] 397 / 3e-135 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10032822 [exp] 386 / 7e-131 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10007283 [exp] 356 / 7e-119 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10043264 [exp] 359 / 1e-118 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10022749 [exp] 354 / 2e-118 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G096042.1 pacid=42801965 polypeptide=Potri.018G096042.1.p locus=Potri.018G096042 ID=Potri.018G096042.1.v4.1 annot-version=v4.1 ATGGGACATGGAAATAACATAGGTAAGTACCAGTTAGGTCGAACAATCGGAGAGGGAACATTTGCCAAGGTTAAGCTGGCTGTAGACAGCACTGATGGTC GTCCTCTTGCAATCAAGATCATGGATAAGAAAAAGGTCATGCAAAGCCATCTCAAGGATCAGGTACAGAGGGAGATAAGAGCTATGAAGCTCTTGCACCA CCCCGGTATCGTAAGGATACATGAGGTGATTGGCACAAAGACAAAGATTTATATGGTAATGGAATATGTATCAGGAGGACAACTAGCAGATAAGCTGTCC TATGCCAAGAAACTTCGTGAATCGGAGGCGAGAAGAATATTCCATCAATTGATAGATGCCGTGGACTATTGCCATAACAGAGGAGTTTATCACAGAGATC TAAAGCCAGAGAACTTACTTCTGGACGGCAAAGGAAATCTGAAAGTCTCTGACTTCGGACTAAGTGCATTACAAAAGACCGCAAGCTTGCTAACTACAAC ATGCGGGTCACCTTTCTATATAGCACCTGAGCTTATTGCAAATAAGGGTTATGAGGGGGCAGCAGCAGATCTTTGGTCCTGTGGGGTAATCCTTTTTGAG CTACTGTCGGGATATCTACCATTTGACGAACGCAACCTCATAATGTTGTATAAGAAGATATCTGCAGCTGATTACACATGTCCACAGTGGTTTACAGAAA GTCAAAAGAAGCTAATATCAAGAATATTAGATCCAAATCCCAGAAAGAGAATAACATTACCAGAGATCCTTGAAGACGAATGGTTTCAGATAGATTACGT GCCTTCTAGTGGATATGAATGTGATGAAAAAATCTTCTTGGATGATGTTAATGCTGCTTTTGATGCTGACGAGGTCAACGCCTCAGAAACAGAGACCCCT AAATCCTCAAGTTTCATAAACGCTTTCCAACTGATAGCAATGTCCCATGATCTTGATTTATCAGGTCTCTTCGAAGAACAGGAAGACAGGAAGCAGAAAA CCAGGCTAGGATCCAAACATACAGTTAACGAAACCATAAGGAAAATAGAAGCTGCTGCAATGGATATGAGTTTGTCAGTTGAAAGAATGAACAATTTCAA GATGAAAATGCATCAGAAACCAAACATGAAAAGATATACCAGATCATATTATGACCTATCAGCAGAGGTAATCGAGGTTGCTCCTATGAATTGCGTTGTA GAAATATCAAAATCAGTCGGGGAGACAAGATTGTACAAAGAGTTCTGCAAAAGTTTATCGAGTTTGCTGACAAAGATATCAGATGTATCATTGCAAAAGG AAGGATCAGAAAAATCAAGCAACAATAGAAGCACTCAAGAGATAAGAAGCTGTGAGGAGCAAAATGAAAAAGTGACTAATGGCCTTCAAGGCTATTCCTC TTCTTGA
AA sequence Show only first row Show all	>Potri.018G096042.1 pacid=42801965 polypeptide=Potri.018G096042.1.p locus=Potri.018G096042 ID=Potri.018G096042.1.v4.1 annot-version=v4.1 MGHGNNIGKYQLGRTIGEGTFAKVKLAVDSTDGRPLAIKIMDKKKVMQSHLKDQVQREIRAMKLLHHPGIVRIHEVIGTKTKIYMVMEYVSGGQLADKLS YAKKLRESEARRIFHQLIDAVDYCHNRGVYHRDLKPENLLLDGKGNLKVSDFGLSALQKTASLLTTTCGSPFYIAPELIANKGYEGAAADLWSCGVILFE LLSGYLPFDERNLIMLYKKISAADYTCPQWFTESQKKLISRILDPNPRKRITLPEILEDEWFQIDYVPSSGYECDEKIFLDDVNAAFDADEVNASETETP KSSSFINAFQLIAMSHDLDLSGLFEEQEDRKQKTRLGSKHTVNETIRKIEAAAMDMSLSVERMNNFKMKMHQKPNMKRYTRSYYDLSAEVIEVAPMNCVV EISKSVGETRLYKEFCKSLSSLLTKISDVSLQKEGSEKSSNNRSTQEIRSCEEQNEKVTNGLQGYSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G096042 [exp]	0	1
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.002G228400 [exp]	2.00	0.9524
AT4G37290			unknown protein		Potri.007G049500 [exp]	3.74	0.9486
AT5G65380			MATE efflux family protein (.1...		Potri.002G102100 [exp]	4.24	0.9356
AT2G14095			unknown protein		Potri.002G101500 [exp]	4.47	0.9365
					Potri.011G047300 [exp]	5.29	0.9375	PPO3
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G328000 [exp]	6.00	0.9395
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.012G121412 [exp]	6.48	0.9350
AT4G30790			unknown protein		Potri.018G103000 [exp]	8.00	0.9111
AT5G50080	AP2_ERF	ERF110	ethylene response factor 110 ...		Potri.005G195000 [exp]	8.48	0.9206
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413400 [exp]	9.38	0.9264

Compare expression of checked genes

Potri.018G096042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.