Plant FIBer expression Database

Potri.018G096049 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57655 813 / 0 xylose isomerase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001321
[exp]
813 / 0 AT5G57655 828 / 0.0 xylose isomerase family protein (.1.2)
Lus10006983
[exp]
779 / 0 AT5G57655 781 / 0.0 xylose isomerase family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.018G096049.1 pacid=42800830 polypeptide=Potri.018G096049.1.p locus=Potri.018G096049 ID=Potri.018G096049.1.v4.1 annot-version=v4.1
ATGGTTAGCTTCAATAAGATGAAAGGTGGGAGGATACTGCTGCTTCTTGTTTGCTCGAGTGTAATCACTTTAGGAGTGTTTGCTGCTGGTCCACCAACAT
GCCCTGCTGATCTTGGTGGAAAATGCAGTGATTCTGGAGAATGGGAAGGGGAGTTCTTCCCTGGCATTCCCAAAATTAAGTACGAGGGACCTTCTAGCAA
GAATCCACTAGCATTCAAATGGTATAATGCGGAAGAAGAGATTCTTGGGAAGAAAATGAAGGATTGGATGAGATTCAGTATTGCATTTTGGCACACATTC
CGTGGAACAGGAGGTGACCCCTTTGGTGCGCCTACCAAGTATTGGCCTTGGGAAGATGGAACCAATTCTTTGGCTATGGCCAAAAGGAGAATGAGAGCTA
ATTTTGAGTTCTTGGAGAAGATTGGAGTTGATAGGTGGTGTTTCCATGATAGGGATATAGCTCCTGATGGTGAAACTCTGGAGGAAAGTAATAAAAACTT
GGATGAAGTAGTGGCCCTTGCTAAAGAACTTCAGGGAACCAAGATCCGTCCTTTGTGGGGTACAGCACAATTGTTTATGCATCCTCGTTACATGCATGGT
GGTGCTACTAGTTCTGAGTTAGGCGTATATGCATATGCTGCAGCTCAAGTGAAGAAAGCAATGGAGGTCACACATGACTTGGGTGGAGAAAATTATGTCT
TTTGGGGTGGTCGTGAGGGTTACCAGAGTCTTTTGAACACAGATATGGAAAGGGAGCTTGATCATTTGGCAAGGTTTTGTGAAGCTGCTGTTGCCTACAA
GAAGAAGATTGGATTCATTGGAACTCTGCTTATTGAGCCCAAGCCTCAAGAACCTACCAAACACCAGTACGACTGGGATGCTGCTACTACAGCTAATTTC
TTGCGGAAATATGGCCTAATAGGGGAATTCAAGCTAAACATCGAGTGCAACCATGCCACTCTTTCAGGTCACAGCTGTCATCATGAGCTTGAAACTGCAA
GAATTAATGGTTTACTGGGAAATATTGATGCGAACACTGGAGACCCTCAGATTGGATGGGATACAGATCAGTTCATGACTGATATTTCAGAGGCAACTAT
GGTTATGATTAGTGTGATAAGAAACGGAGGATTAGCACCAGGAGGATTCAATTTTGATGCAAAACTGCGAAGAGAGAGTACAGAAGTTGAGGACATATTC
CTTGCTCATATTAGTGGAATGGATACCCTGGCTCGTGGACTCCGAAGTGCTGCCAAGTTGATTCAGGATGGTTCATTGGCTGAGCTTGTTCGCAAACGCT
ATCAGAGTTTTGATACAGAAATCGGGGCACAAATAGAGGCTGGTAAGGGAGATTTTGAAACGCTTGAGAAGCTGGCCATGAAATGGGGTGAACCCAAGGT
TCCATCTGCTAAGCAGGAACTTGCTGAGATGATTTTCCAGTCTGCACTGTAG
AA sequence
>Potri.018G096049.1 pacid=42800830 polypeptide=Potri.018G096049.1.p locus=Potri.018G096049 ID=Potri.018G096049.1.v4.1 annot-version=v4.1
MVSFNKMKGGRILLLLVCSSVITLGVFAAGPPTCPADLGGKCSDSGEWEGEFFPGIPKIKYEGPSSKNPLAFKWYNAEEEILGKKMKDWMRFSIAFWHTF
RGTGGDPFGAPTKYWPWEDGTNSLAMAKRRMRANFEFLEKIGVDRWCFHDRDIAPDGETLEESNKNLDEVVALAKELQGTKIRPLWGTAQLFMHPRYMHG
GATSSELGVYAYAAAQVKKAMEVTHDLGGENYVFWGGREGYQSLLNTDMERELDHLARFCEAAVAYKKKIGFIGTLLIEPKPQEPTKHQYDWDAATTANF
LRKYGLIGEFKLNIECNHATLSGHSCHHELETARINGLLGNIDANTGDPQIGWDTDQFMTDISEATMVMISVIRNGGLAPGGFNFDAKLRRESTEVEDIF
LAHISGMDTLARGLRSAAKLIQDGSLAELVRKRYQSFDTEIGAQIEAGKGDFETLEKLAMKWGEPKVPSAKQELAEMIFQSAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57655 xylose isomerase family protei... Potri.018G096049
[exp]
0 1
AT4G35090 CAT2 catalase 2 (.1.2) Potri.005G251600
[exp]
1.73 0.8228 CAT3,Pt-CAT1.5
AT4G15210 BAM5, AT-BETA-A... REDUCED BETA AMYLASE 1, ARABID... Potri.017G040800
[exp]
1.73 0.8854 Pt-BMY1.1
AT3G07350 Protein of unknown function (D... Potri.004G184700
[exp]
2.82 0.8207
AT1G54070 Dormancy/auxin associated fami... Potri.003G070500
[exp]
3.46 0.7589
AT2G44970 alpha/beta-Hydrolases superfam... Potri.018G085600
[exp]
8.60 0.8260
Potri.016G129400
[exp]
12.48 0.7093
AT3G48530 KING1 SNF1-related protein kinase re... Potri.012G097000
[exp]
12.84 0.7537
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Potri.006G027700
[exp]
23.87 0.7096
AT5G03860 MLS malate synthase (.1.2) Potri.012G094532
[exp]
25.09 0.7864
AT5G21940 unknown protein Potri.018G048100
[exp]
26.40 0.7486

Potri.018G096049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.