Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24720 651 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G29110 650 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 646 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 640 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT5G27100 617 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24710 614 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G11210 588 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G31710 543 / 3e-179 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT5G11180 473 / 2e-152 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT1G42540 437 / 2e-138 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096500 [exp] 1752 / 0 AT2G29110 662 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172100 [exp] 1169 / 0 AT2G29110 724 / 0.0 glutamate receptor 2.8 (.1) Potri.006G174600 [exp] 1161 / 0 AT2G29110 713 / 0.0 glutamate receptor 2.8 (.1) Potri.006G174202 [exp] 1153 / 0 AT2G29110 707 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172801 [exp] 1137 / 0 AT2G29110 676 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172900 [exp] 997 / 0 AT2G29110 619 / 0.0 glutamate receptor 2.8 (.1) Potri.018G012100 [exp] 793 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 781 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012900 [exp] 776 / 0 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026235 [exp] 702 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 667 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 595 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 591 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10012245 [exp] 434 / 4e-137 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10027171 [exp] 430 / 2e-135 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 425 / 2e-133 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10031560 [exp] 414 / 1e-129 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10039672 [exp] 411 / 7e-129 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10015118 [exp] 404 / 1e-125 AT2G32400 987 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF10613 [poplar] [flax] Lig_chan-Glu_bd Ligated ion channel L-glutamate- and glycine-binding site CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.018G096300.1 pacid=42802050 polypeptide=Potri.018G096300.1.p locus=Potri.018G096300 ID=Potri.018G096300.1.v4.1 annot-version=v4.1 ATGGCAATTCCGAAGCAGAAATTCACCCTGCCTTTTTTCACCCTTCTCTTGGTTAATCTCTGGTCCAACCAAATGGTGATCATGGCAATGGAGAGTATAC CAATAGGAGTAGTTCTTGATTTGAACTCTACAGTTGGAGAAATGGCAGAGAGCTGCATGTCCATGGCAGTCTCCGATTTCTATGCTCTTAATGTTGATTT TAAAACGAGACTCGCTCTTTTCACTAGGGATTCCAGCAGTGATGTCGTTGCTGCAACTTCTTCAGTGCTGGATTTAATGAAGAATGATCAAGTGCATGCT ATCATAGGGCCTCAAAAGTCATCGCAAGCTAAGTTTGTCATAGAGCTTGGAGGAAAAGCAGAGGTTCCGATTGTTTCTTTCTCAGCCACTAGCCCAACTC TTTCTGCAACTCAAAGCAAATATTTTGTCCGGACAGCCCAGGATGATTCTTCTCAAGTGAAAGCAATATCCAGCATTGTCCAAGCTTATGGTTGGCGGGA GATTGTACCAATCTATGAAGACACCGAATATGGAAATGGTTTGGTTCCATTTTTGTTAGATGCCTTTCAAGAGATCGACACTCGAGTCCCTTATGGCAGT CGAATTCCTTTGTATTTCAATGACACTCAAATCATGAGCGAGCTCCACAAGTTGAAGGAGATGAAGAAGAGTATATTTCTAGTGCACATGTCAGCCTCCC TTGGGTCCAGGCTGTTCTTACTTGCCAAGGATGCAGGAATGATGAGCGAAGGATATGCATGGCTCGTGACAGCTGGATTATCCGCCTTGTTAGATCCTCT AGGTTCTGAAGTCATGGATTCAATGCAAGGTGTGTTGGGTATAAAGCCACATATACCATCTTCAAAGAAACTCGAAAGTTTTAAATCAAGATGGAGAAAG AAATTCACCATAAGCAAACCACAAAGTAAGATCAATGAATTAAACCTTTTCGGTTTGTGGGCATATGATACAGTTTGGGCAATAGCAATGGCTGTAGAAA AGGCTGGTATTGTGCATTCTAGATACGTAAAGCCGAATACTAGTGAAAGCACAGTTGACATTGCTGCCTTGGGAAAATCTGAAACGGGTCCAAGACTCCT AAGCTCCATATTAAGCACAAGATTTCAAGGCCTAGGTGGGGACTTCCATTTGGCTGGTGGAGAAAGGGTACCTTCAGCATTTGAAATACTCAATTTGATC GGAAAAGCAGAGAGAGTCATTGGATATTGGACTCCAGAGAGAGGACTCTCACGAAACTTGTATACTAATGGTAAAATAGCATATTCAACTTCCAAAAACA AACTGAAGGAGCCAATTTGGCCAGGAGACACAACCCAGCAGCCAAAGAGGTTGAGGATTGGGGTTCCACTGAAAACTGGTTTTAATGAGTTTATCAAAGT GGAATGGAATCCTGAAGATGATAAACCTATTGTTTCAGGTTTCACCCGAGATGTTTTCGTCTCCGTGGTTGAAGCATTACCATTCCCCCTTCCGTATGAG TTCATTCCCTTCGTCAACAAAAATAAGCAGAGTGCAGGGACTTACAATGATCTTCTTGAGCAAATCAAACTAAAGAATTTTGATGCTGCGGTGGGAGATA TAACAATAATTGCCAATCGCTCAACATATGTGGATTTTACGTTGCCTTTTTCAGAATCAGGCATCACAATGGTAGTTTTGACAAAACGTGATGAGAGGGA AAACATGTGGATTTTCTTGAAGCCACTAAGCCTGGAGCTTTGGTTAACAACTGGAATAGCATTCATCCTCACTGGCTTAGTGGTGTGGGTGCTCGAACAC CGTGAAAACAAAGTGTTCAGGGGAAAACCAGCGCAGCAACTTGGCACAACGTTGTGGTTCTCCTTTTCAACCCTCTTCTTTGCACATAGGGAGAAGGTGG TGAATAACTGGACAAGATTTGTATTGATCATATGGATTTTTGTGGTGCTAATCATATCACAGAGTTACACTGCTAGCTTAGCCTCAATTTTGACTGTAAA GCGGTTGCAGCCTACATTTGTTGATGTCAAAGAGATTAGAAAGAATGGTTACTTTGTAGGACACCAGAAGGATTCTTTTGTGAAAGACTTCCTCGTAAAA CAATTGAAATTCAATGACACCATGTTGAGGGAATATAGCACTCCAGAAGAGTATCATGATGCATTGTCTCGTGGAACCCACAATGGTGGTGTAGCTGCTA TCTTTGCTGGAATTCCCTACGTCAAACTCTTTCTAGCAAAGTATTCCTCCAAATTCCAAATGGTAGGACAACCCTATAAAAACGATGGATTTGGCTTTGC ATTTCCCCTTGGATCCCCACTGGTCCCTTACATTTCAAGGGCAATCTTGAATGTCACACAAGATAAAGATAAAATGGACGAAATTGAACGAAGGAACTTT GGTGGCGAAACCACTTGCTCAGATCAACCTTCCATGGAACCCTCTGGTGGTCTTGGTTTACCCAGCTTCGGAGGCCTCTTCATCATCACAGGAGTTGCTT CCATGTCTGCTCTTCTGATATATGTCACGAAGTTCCTTTACATTCATTGGCCTGCTTCGAACACCATGGATCAAGAAAGATCCTTTTACTTGAGAGTTCT TGAATTGGCAAAACATTTTGACAAGGAAGATCCATCAGCTCATCATCTTAATGGAGCTGGGTCAAGAGTTCACGCTGTACCAAGTGTCGAAATAGTTGGA GCTTCACCTGATATCGATGATGCACGTAGCCATTCAAGGACTTCCAGTGAAGGATCTGGAGACATCATTGGAGATCAAGACCATGACAATCATACCCCAA GGAACAGTGCTGCAAACCCCGAACCCCCACACACACCGTAG
AA sequence Show only first row Show all	>Potri.018G096300.1 pacid=42802050 polypeptide=Potri.018G096300.1.p locus=Potri.018G096300 ID=Potri.018G096300.1.v4.1 annot-version=v4.1 MAIPKQKFTLPFFTLLLVNLWSNQMVIMAMESIPIGVVLDLNSTVGEMAESCMSMAVSDFYALNVDFKTRLALFTRDSSSDVVAATSSVLDLMKNDQVHA IIGPQKSSQAKFVIELGGKAEVPIVSFSATSPTLSATQSKYFVRTAQDDSSQVKAISSIVQAYGWREIVPIYEDTEYGNGLVPFLLDAFQEIDTRVPYGS RIPLYFNDTQIMSELHKLKEMKKSIFLVHMSASLGSRLFLLAKDAGMMSEGYAWLVTAGLSALLDPLGSEVMDSMQGVLGIKPHIPSSKKLESFKSRWRK KFTISKPQSKINELNLFGLWAYDTVWAIAMAVEKAGIVHSRYVKPNTSESTVDIAALGKSETGPRLLSSILSTRFQGLGGDFHLAGGERVPSAFEILNLI GKAERVIGYWTPERGLSRNLYTNGKIAYSTSKNKLKEPIWPGDTTQQPKRLRIGVPLKTGFNEFIKVEWNPEDDKPIVSGFTRDVFVSVVEALPFPLPYE FIPFVNKNKQSAGTYNDLLEQIKLKNFDAAVGDITIIANRSTYVDFTLPFSESGITMVVLTKRDERENMWIFLKPLSLELWLTTGIAFILTGLVVWVLEH RENKVFRGKPAQQLGTTLWFSFSTLFFAHREKVVNNWTRFVLIIWIFVVLIISQSYTASLASILTVKRLQPTFVDVKEIRKNGYFVGHQKDSFVKDFLVK QLKFNDTMLREYSTPEEYHDALSRGTHNGGVAAIFAGIPYVKLFLAKYSSKFQMVGQPYKNDGFGFAFPLGSPLVPYISRAILNVTQDKDKMDEIERRNF GGETTCSDQPSMEPSGGLGLPSFGGLFIITGVASMSALLIYVTKFLYIHWPASNTMDQERSFYLRVLELAKHFDKEDPSAHHLNGAGSRVHAVPSVEIVG ASPDIDDARSHSRTSSEGSGDIIGDQDHDNHTPRNSAANPEPPHTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24720		ATGLR2.2	glutamate receptor 2.2 (.1)		Potri.018G096300 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033200 [exp]	1.41	0.9370
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.012G145500 [exp]	3.16	0.9213	NHL25.1
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.016G101300 [exp]	3.87	0.9021
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	4.58	0.9137
					Potri.016G140250 [exp]	7.41	0.8872
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Potri.004G060900 [exp]	7.74	0.8977
AT5G38260			Protein kinase superfamily pro...		Potri.017G117340 [exp]	8.36	0.8976
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211700 [exp]	8.71	0.8710
AT3G14280			unknown protein		Potri.003G072400 [exp]	10.95	0.8892
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.008G170100 [exp]	12.96	0.8822

Compare expression of checked genes

Potri.018G096300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.