Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28020 434 / 2e-152 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006992 [exp] 512 / 0 AT4G28020 452 / 2e-159 unknown protein Lus10008905 [exp] 377 / 4e-130 AT4G28020 316 / 8e-107 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01980 [poplar] [flax] TrmO tRNA-methyltransferase O
Representative CDS sequence Show only first row Show all	>Potri.018G096900.2 pacid=42800621 polypeptide=Potri.018G096900.2.p locus=Potri.018G096900 ID=Potri.018G096900.2.v4.1 annot-version=v4.1 ATGGGTTCTACTGTAAACTCAAAATGGTTGCCTGTGACAACCACCATAACTGTGGCACTTGCACTTCTTTCTGCCTCAACAGCAGCTATCTCTCTTTATT TTTGTAGAAAGAAATCAAAAGTTTTGTATTCAAAGATTCAAGAACTTGAGATTTCTCTCAATTCTTGTATGCAAAAAAGTGCTGCTGAGAGACAAGGTCG AATTAGAGCCCAACAGGATTTGAGGAAGACCTTAGCACAACCCAAGTCTGAGAATTTGGAGCAGGCTTCTTATCCCATGACCCCTATTGGAGTTGTTCAG TCTTGCTTCTCAACCAGAAATGGGACTCCAAGGCAACCCTTACTCGTACCTCTTGCTAGGGCATGCTTAGTCTTTGACTCAGCTCGGGTTCCTCCAGCAT CCCTTGAGGGTCTTGTAGAATATTCTCATTGCTGGATTATATATGTGTTTCATTTGAATACAGATTTGGTGAAGTTATGGAAGCATCCGTCTAGATCAAA GTTTAAGGCTAAGGTTAGAGTACCAAGACTGAAAGGAGGAAAGATGGGAGTCTTTGCTACAAGATCTCCACATCGCCCATGCCCTATTGGGCTCACTGTT GCAAAGGTGGAGGCTGTACAAGGAAACATGGTTCTTCTATCTGGTGTTGACCTGGTTGACGGGACACCAATACTAGACATCAAACCATATCTACCATACT GTGATAGCATCCAAGGGGCAGCAGTGCCGGAGTGGGTAATGGTGGACAATATGTTAGCAGTAGCTTCTGTTAACTTTTCTGAGGGCTTCTCCTCCTCACT ATCTGATTGTTGGGAAACAGCAAAAAAGAAGTCGCTCTATGCATCACCAGATGAACTTCAATGCTTAATCAAGCAGGTGCTTTCATGGGATATTCGATCA ATATCTCAACGAAATCAACCACATGATCCCCTTATTAAGACTGGAAATGGGGAAGCACCACATAGTGCTCTTGATTCAAACCAGAACCAAGATCAAGAAG CTTCGGACAATGAAAACAGCCAGGTTTGTCATCCTTCTGGGGATGTAACATACCACTTAATTTTGGAAGGAATGGATGTCTCATACAGAATTGATTTCAA TGGCAATGTAATTGTAGAGAATGTTGTCGTTTCACCTGACATTCTGAATGGTAATCAAAACCGTAGCAGTTTCTTAATGTGGAGAGACGAGCTCAGTTAA
AA sequence Show only first row Show all	>Potri.018G096900.2 pacid=42800621 polypeptide=Potri.018G096900.2.p locus=Potri.018G096900 ID=Potri.018G096900.2.v4.1 annot-version=v4.1 MGSTVNSKWLPVTTTITVALALLSASTAAISLYFCRKKSKVLYSKIQELEISLNSCMQKSAAERQGRIRAQQDLRKTLAQPKSENLEQASYPMTPIGVVQ SCFSTRNGTPRQPLLVPLARACLVFDSARVPPASLEGLVEYSHCWIIYVFHLNTDLVKLWKHPSRSKFKAKVRVPRLKGGKMGVFATRSPHRPCPIGLTV AKVEAVQGNMVLLSGVDLVDGTPILDIKPYLPYCDSIQGAAVPEWVMVDNMLAVASVNFSEGFSSSLSDCWETAKKKSLYASPDELQCLIKQVLSWDIRS ISQRNQPHDPLIKTGNGEAPHSALDSNQNQDQEASDNENSQVCHPSGDVTYHLILEGMDVSYRIDFNGNVIVENVVVSPDILNGNQNRSSFLMWRDELS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28020			unknown protein		Potri.018G096900 [exp]	0	1
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Potri.002G241366 [exp]	6.16	0.8264
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.010G199700 [exp]	9.48	0.8384
					Potri.002G067900 [exp]	10.39	0.7768
AT1G73180			Eukaryotic translation initiat...		Potri.013G126300 [exp]	27.87	0.7313
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Potri.011G104400 [exp]	28.14	0.7786
AT4G33170			Tetratricopeptide repeat (TPR)...		Potri.006G076100 [exp]	50.79	0.7558
AT5G41960			unknown protein		Potri.001G084600 [exp]	55.69	0.7910
AT2G39910			ARM repeat superfamily protein...		Potri.008G063500 [exp]	66.63	0.7358
AT5G07950			unknown protein		Potri.018G051500 [exp]	72.86	0.7260
AT3G19440			Pseudouridine synthase family ...		Potri.009G095700 [exp]	76.31	0.7510

Compare expression of checked genes

Potri.018G096900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.