Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46550 317 / 1e-104 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT2G45470 102 / 2e-23 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT5G55730 94 / 7e-21 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G12730 87 / 2e-18 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT3G60900 85 / 1e-17 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT5G60490 76 / 3e-15 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G44130 71 / 6e-14 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 71 / 1e-13 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G04780 70 / 2e-13 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT5G03170 70 / 2e-13 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G174900 [exp] 563 / 0 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.014G071700 [exp] 110 / 2e-26 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.011G093500 [exp] 93 / 1e-20 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G168100 [exp] 93 / 2e-20 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.001G367900 [exp] 93 / 2e-20 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G162900 [exp] 86 / 1e-18 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.002G223300 [exp] 84 / 5e-18 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.013G151300 [exp] 81 / 6e-17 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.013G151366 [exp] 80 / 1e-16 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016554 [exp] 431 / 3e-149 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10040821 [exp] 426 / 2e-147 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10009235 [exp] 107 / 3e-25 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10022517 [exp] 100 / 6e-23 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10016617 [exp] 100 / 1e-22 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10001752 [exp] 89 / 2e-19 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10001178 [exp] 89 / 7e-19 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10012344 [exp] 87 / 3e-18 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 87 / 3e-18 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10012351 [exp] 84 / 7e-18 AT2G04780 223 / 9e-73 FASCICLIN-like arabinoogalactan 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.018G097000.1 pacid=42802190 polypeptide=Potri.018G097000.1.p locus=Potri.018G097000 ID=Potri.018G097000.1.v4.1 annot-version=v4.1 ATGGCACCAATCAATCCAGCCATTTCCCATATTACCCCAACAACCACACTAACCTATTTCCTCCTCCTCCTCCTCGCCACCACCACTACTACCACCCCAA TTTTAGCCATAACCAATTTAACAGCCCTCCTCTCCTCCTTCCCTGACTTCTCCTCCTTCACTTCCCTCATCACCTCCATACCCTCTCTAACCTCAGACCT TTCTGACCGATCTGCCCTTACTCTCTTAGTCATTCCAAATTCTTATCTTTCCTCCTCTTTAGACCTCACGCGCCGCCTCTCTCCATCTGCCCTCGCCGAC CTCCTTCGTTACCACATCCTCCTCCAATACCTCTCCTCCTCCGACCTCCACCAAGTTCCCCCCTCTGGGGCCCTCATTACCACCCTCTTCCAAACCACCG GCCGTGCCTCCTCTAACTCTGGCTCTGTTAACATCACTCGAAACCCAGTAACAAATGCAATCACTATCTCCTCTCCATCCCCGTTTTCCTCCTCAAACGC CACGGTTTTGTCCTTGATAATGACTCTTCCTTACAATGTTTCCATAATTTCAGTGAATTCTCTGTTAGTCCCATATGGTTTTGATTTGATGGCATCAGAA ACAAGGCCTACATTGGGTTTGAATATCACTAAAGCATTACTTGATGGCCACAGTTTTTTGGTCGCAGCTTCTTTGTTATCTGCTTCTGGAGTAGTACAGG AATTTGAAGCTGATGAAGGAGGAGCTGGGATAACTCTTTTTGTGCCTACAGATTCTGCTTTTTCAGATCTGTCGGCAACTGCTATCAGTCTACAGTCATT GCCAGCTGATAAGAAAGCTGATGTCTTAAAATTTCATGTCTTGCATTCCTATTACCCTCTGGGTTCCTTGGAGTCTATCGTTAATCCTGTGCAGCCTACA TTGGCTACTGAAGATATGGGTGCTGGCAGTTTTACGCTGAATATTTCGAGGGTTAATGGGTCAGTTGCGATTGATTCAGGGATTGTTCAGGCGTCTGTTA CGCAGACTGTTTTTGACCAGAACCCTGTTGTCATTTTTGGTGTTTCGAAAGTGCTTTTGCCTAAAGAGATTTTTGGGAGGAATCCTGTGTTGACTAGTAA GCCAGGGAATACTGATATGGGAAATGCACAGCCGCCTGTCAGTGCTTTGTCACCAGAGAATTCGCCGAAAATGCTGTCGTCTGCTCCAGGTGTTAGAGAA GAGATTAAGTCTGGAGTTGGAGGGTTGCAGTGGTTGAGTACTCTACATTTGCTTTGTGTTGTTTTTGTATGCAATTGTATTTAG
AA sequence Show only first row Show all	>Potri.018G097000.1 pacid=42802190 polypeptide=Potri.018G097000.1.p locus=Potri.018G097000 ID=Potri.018G097000.1.v4.1 annot-version=v4.1 MAPINPAISHITPTTTLTYFLLLLLATTTTTTPILAITNLTALLSSFPDFSSFTSLITSIPSLTSDLSDRSALTLLVIPNSYLSSSLDLTRRLSPSALAD LLRYHILLQYLSSSDLHQVPPSGALITTLFQTTGRASSNSGSVNITRNPVTNAITISSPSPFSSSNATVLSLIMTLPYNVSIISVNSLLVPYGFDLMASE TRPTLGLNITKALLDGHSFLVAASLLSASGVVQEFEADEGGAGITLFVPTDSAFSDLSATAISLQSLPADKKADVLKFHVLHSYYPLGSLESIVNPVQPT LATEDMGAGSFTLNISRVNGSVAIDSGIVQASVTQTVFDQNPVVIFGVSKVLLPKEIFGRNPVLTSKPGNTDMGNAQPPVSALSPENSPKMLSSAPGVRE EIKSGVGGLQWLSTLHLLCVVFVCNCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.018G097000 [exp]	0	1
AT1G69910			Protein kinase superfamily pro...		Potri.010G035300 [exp]	7.41	0.7447
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.007G022000 [exp]	12.32	0.6974
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.007G092100 [exp]	12.72	0.7969
AT5G26960			Galactose oxidase/kelch repeat...		Potri.001G271900 [exp]	13.41	0.7192
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G094000 [exp]	15.49	0.7766
AT1G11125			unknown protein		Potri.011G045700 [exp]	17.66	0.7936
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.001G129000 [exp]	21.07	0.6879
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.009G133400 [exp]	32.77	0.7698
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Potri.012G044600 [exp]	36.66	0.7437
					Potri.007G078350 [exp]	36.76	0.7519

Compare expression of checked genes

Potri.018G097000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.