Plant FIBer expression Database

Potri.018G097100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57700 509 / 0 BNR/Asp-box repeat family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G175161
[exp]
76 / 2e-16 AT5G57700 43 / 1e-05 BNR/Asp-box repeat family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008903
[exp]
511 / 0 AT5G57700 497 / 5e-178 BNR/Asp-box repeat family protein (.1.2.3.4)
Lus10006994
[exp]
378 / 1e-130 AT5G57700 372 / 4e-128 BNR/Asp-box repeat family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0434 Sialidase PF13088 BNR_2 BNR repeat-like domain
Representative CDS sequence
>Potri.018G097100.1 pacid=42800850 polypeptide=Potri.018G097100.1.p locus=Potri.018G097100 ID=Potri.018G097100.1.v4.1 annot-version=v4.1
ATGTTCCAAGTTCTCTTCAGGAAGGTCACTGGAATAAACACAAATTATACGGTTCTGCAGCCAAAGATTTCAAATATGAGCAAAGACTGTCACAACTGGC
AGCTAGTGAAAGAGGAGTTCACATTTCCTGCAAACTCTTCTCCCTTCAATAGCTGTCATGCCTCTACCATTGTTGAGGTTGATAAAAATCACTTTTTGGT
AGCTTATTTTGGAGGTACAAAAGAGGGAGCACCTGATGTGAAGATTTGGATACAGACATACAAAGATGGTTATTGGCAATCACCCATCATCGTTGATGAT
CAGCTTGATGTTCCTATGTGGAACCCTGTGCTATTCAAACTGGCATCAGAGGAGTTACTTCTGTTCTATAAAGTCGGTCAAGAGGTCCAAAAATGGAGTG
GATGCATGAAACGGTCTTATGACAAAGGTGTTACTTGGTCAAAGAGAGAGCAACTTCCTCCTGGCATATTAGGACCGTCAAAGAATAAGCCAATCTTGTT
GGAAAATGGGCTCTTGCTCTGTGGATCATCTGTAGAAAGTTGGAATTCTTGGGGTGCATGGATGGAGGTGACTGCAGATGCAGGTAGGTCATGGAGAAAG
CATGGCCCAATATACGTTGAAAATACATCTCTTAGTGTGATTCAGCCAGTACCATTCCAGACTGCAGATGGGACATTTCGTGTTTTATTGCGTTCGTTTG
ATGACATTGGAAGAGTTTGTATGTCAGAATCCTATGATGGTGGTGTGACCTGGGGTTATGCAAAACCCACTGAACTCCCCAACCCAAACTCAGGTATTGA
TGGGGTTAAACTAAAAGATGGTCCTGTCTTGCTTGCTTACAATACAATCTCAAGGGGCGTGCTTAAAGTTGCTGTGTCCAAAGATGATGGTGACTCTTGG
CATGATGTTGTTACACTGGAGGAAAAACTGGATATGGAATTCTCATATCCAGCGGTTATCCAGGCTAGTGATGGTTCTGTTCACATCACTTACACATACA
ATAGGACACAAATTAAGCATGTGGTCCTTCAACCAAGTTGA
AA sequence
>Potri.018G097100.1 pacid=42800850 polypeptide=Potri.018G097100.1.p locus=Potri.018G097100 ID=Potri.018G097100.1.v4.1 annot-version=v4.1
MFQVLFRKVTGINTNYTVLQPKISNMSKDCHNWQLVKEEFTFPANSSPFNSCHASTIVEVDKNHFLVAYFGGTKEGAPDVKIWIQTYKDGYWQSPIIVDD
QLDVPMWNPVLFKLASEELLLFYKVGQEVQKWSGCMKRSYDKGVTWSKREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGAWMEVTADAGRSWRK
HGPIYVENTSLSVIQPVPFQTADGTFRVLLRSFDDIGRVCMSESYDGGVTWGYAKPTELPNPNSGIDGVKLKDGPVLLAYNTISRGVLKVAVSKDDGDSW
HDVVTLEEKLDMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLQPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57700 BNR/Asp-box repeat family prot... Potri.018G097100
[exp]
0 1
AT2G01430 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-... Potri.008G129500
[exp]
6.92 0.7188
AT2G17410 ARID ARID/BRIGHT DNA-binding domain... Potri.001G456500
[exp]
9.32 0.7257
AT5G42830 HXXXD-type acyl-transferase fa... Potri.014G025550
[exp]
12.68 0.6595
AT4G38040 Exostosin family protein (.1) Potri.010G197900
[exp]
21.16 0.6703
AT1G19025 DNA repair metallo-beta-lactam... Potri.007G106700
[exp]
22.44 0.6540
AT5G61790 CNX1, ATCNX1 calnexin 1 (.1) Potri.001G070600
[exp]
29.79 0.6945
AT4G15900 PRL1 pleiotropic regulatory locus 1... Potri.010G012800
[exp]
30.57 0.6667 PRL1.1
AT5G49710 unknown protein Potri.002G104200
[exp]
36.20 0.6627
AT5G52200 AtI-2 inhibitor-2, phosphoprotein ph... Potri.012G138600
[exp]
41.82 0.6285
AT1G70480 Domain of unknown function (DU... Potri.010G041700
[exp]
43.95 0.6389

Potri.018G097100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.