Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18710 781 / 0 SCY1 SECY homolog 1 (.1) AT2G31530 79 / 3e-15 EMB2289, SCY2 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G175300 [exp] 916 / 0 AT2G18710 739 / 0.0 SECY homolog 1 (.1) Potri.002G053900 [exp] 122 / 1e-29 AT2G31530 789 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023202 [exp] 787 / 0 AT2G18710 849 / 0.0 SECY homolog 1 (.1) Lus10008901 [exp] 390 / 5e-131 AT2G18710 382 / 1e-127 SECY homolog 1 (.1) Lus10014663 [exp] 106 / 7e-24 AT2G31530 705 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1) Lus10000654 [exp] 55 / 1e-07 AT1G03180 287 / 1e-94 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00344 [poplar] [flax] SecY SecY translocase
Representative CDS sequence Show only first row Show all	>Potri.018G097500.2 pacid=42801606 polypeptide=Potri.018G097500.2.p locus=Potri.018G097500 ID=Potri.018G097500.2.v4.1 annot-version=v4.1 ATGTTGTTAACTGTGAGAGAAGCATGTCCTTGCTCGCCAATTAGCTTCAACCTCTCTCGTATCAATCCCACAAGAGCCTCTCAAAGACTCAAAACATCAG TTTGCAGAGCCAGCTTCTCTGTCCAGCCAAAACCCAACACCAAGTCGTGGAACACTACCCTTAACGCCAATAGTTTTGATCCCTTGGGTATTAATTCAAA TGTACCATCCAGTCTAAATGCTTCCTGGGAAAGTCTTCTAGCCTTCTTATCGCCAATATTTGAGAGTGCTTCGAGTACAAAAAAAGATAAGCGAGGAGTT GCAGCTGCAATCGAGGACAGTTCCATTGATTTTGGCGATTTCTTCAAAGGCCCATTACCAGGAAAATTTCTCAAGCTTTTGGGGTTTCTGGCTCTATCCC GTCTTGGGATATATATACCCCTTGGTGGGGTAAATCAGGAGGCATTCGCTGGAAATTTAGATCAGAATAGCTTATTGAGCACTTTGGATTCATTTTCTGG GGGAGGCATTGGTAGACTTGGAATATGTTCACTAGGAATTGTTCCCTTTATCAATGCCCAGATTGTGTTTCAGCTTCTTGCTCAAATTTATCCCAAGTTG CAAGATCTTCAGAAGAGAGAAGGTGAAGCAGGAAGAAAGAAACTTCTTCAGTATACTCGGTATGCTTCAGTTGGTTTCGCTATAGTACAGGCAATTGGTC AGGTTCTTTACCTCCGTCCTTACGTTGATGACTTTAACACACAGTGGGTTCTAACATCTGTTACTTTATTGACACTTGGCTCTGTGTTTACAACTTACAT TGGAGAACGAATCTCTGATCTAAAACTTGGAAATGGTACATCTCTTTTGATATTTACAAGTATTATTTCCTACTTGCCGGCATCTTTTGGTCGGACTGCT GCAGAGGCATTTCAGGATGGTAACTATGTTGGACTTGGCACCATCATCTTTTCGTTCTTCCTATTAGTTCTTGGTATTGTCTATGTTCAGGAGGCAGAAA GAAAGATTCCACTCAACTATGCCTCAAGATATACCAGCAGAAGTGGTGGGCTTCAAAAATCTGCTTATCTACCCTTTAAGGTAAATAGTTCTGGGGTGAT GCCAATTATCTTTTCTACATCATCATTGGCTCTTCCTGGCACCCTAGCGCGGTTCACTGGAATATCTGCACTGAAGAAAGCTGCATTGGCTTTGAACCCG GGAGGTTCTTTCTATCTCCCAACCAATATCCTATTAATAGCGTTCTTCAACTATTATTACACCTTCCTTCAATTAGACCCTGATGATGTGAGTGAACAGT TAAAGCGCCAAGGTGCATCAATTCCACTTGTACGACCGGGTAAAAGTACCGCTGCTTTTCTTAAAACAGTTCTTAGCCGCATATCTGTTCTGGGTTCTGC CTTTTTGGCTATCCTGGCTGCTGGTCCTTCTGTGATTGAACAAATCTCACACTTGACTGCATTTCGAGGATTTGCTGGCACTTCCGTCCTGATTCTTGTT GGTTGTGCAACAGACACTGCAAGAAAAGTTCAAGCAGAAATAATATCCCAGAAGTACAAGAACATAGAGTTTTATGACATTGACAGGTATGGTCCATAA
AA sequence Show only first row Show all	>Potri.018G097500.2 pacid=42801606 polypeptide=Potri.018G097500.2.p locus=Potri.018G097500 ID=Potri.018G097500.2.v4.1 annot-version=v4.1 MLLTVREACPCSPISFNLSRINPTRASQRLKTSVCRASFSVQPKPNTKSWNTTLNANSFDPLGINSNVPSSLNASWESLLAFLSPIFESASSTKKDKRGV AAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNQEAFAGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKL QDLQKREGEAGRKKLLQYTRYASVGFAIVQAIGQVLYLRPYVDDFNTQWVLTSVTLLTLGSVFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTA AEAFQDGNYVGLGTIIFSFFLLVLGIVYVQEAERKIPLNYASRYTSRSGGLQKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGISALKKAALALNP GGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSAFLAILAAGPSVIEQISHLTAFRGFAGTSVLILV GCATDTARKVQAEIISQKYKNIEFYDIDRYGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18710		SCY1	SECY homolog 1 (.1)		Potri.018G097500 [exp]	0	1
AT1G06240			Protein of unknown function DU...		Potri.019G090600 [exp]	2.00	0.9661
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.005G097000 [exp]	7.74	0.9631
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Potri.004G120300 [exp]	10.77	0.9636
AT5G22210			unknown protein		Potri.009G162200 [exp]	15.49	0.9413
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Potri.005G095300 [exp]	20.00	0.9448	Pt-MST2.1
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Potri.014G160600 [exp]	20.19	0.9609
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.003G077300 [exp]	20.34	0.9544	N21L4
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Potri.001G211300 [exp]	20.78	0.9592
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.013G070500 [exp]	21.63	0.9604	Pt-SIGB.2
AT2G44870			unknown protein		Potri.004G030100 [exp]	22.24	0.9604

Compare expression of checked genes

Potri.018G097500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.