Plant FIBer expression Database

Potri.018G097900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16850 162 / 1e-47 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019980
[exp]
135 / 3e-37 AT4G16850 194 / 9e-60 unknown protein
Lus10015507
[exp]
0 / 1 AT4G16850 127 / 1e-34 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G097900.1 pacid=42801766 polypeptide=Potri.018G097900.1.p locus=Potri.018G097900 ID=Potri.018G097900.1.v4.1 annot-version=v4.1
ATGCCACATCCAACAACAGTCATCAATCCAAAGATTTCTTCAACTCCAGCAATCATATGTTCTTGTTTGATCTTTCAACCCCTCCAGATTTTCTTTATAA
ACAAACAGATCTTCATTTTCATTTTTGCCCTCCTTGCCCTCCCCCTCTCTCTCCTCTTCTTCTCTCGCTCCCTCGCTTTTCATCCCGTCCAATCTCAAAT
CCTCCACCTCGAATTCATCGCGGCTCTCTCACCCACCCGTTTCGAAGCCCGCCACGTCTGGAAAGAGTCTCGCGAAACCGCTATCGCCCTCCTCCACTGC
AATTTCCTCTACTTCGTGCCCTCTTTCACTCTCTCCCTCCTCGCCGCCGTCTCCTCCGTCGTCTCCGCCGAATCGGGGTATCACAGAAACCCCATTGGCG
TAAAGTCCGCTCTTAACGCTGTCAAGTCCACGTGGCGAAGGACGTTAGTTACTTCGATTTTTGTTTATGTCATCCTGTTCTGTTATTCTAGCGTGCCTCG
TACTTTATGGTCCTTAACTGGAGGAGGTGTTTTCGGGTCGGGTTTTGTTATTTGGGTTGTCGGGTCGGCTGTTGAGATTTATTTGATGGTGGTTTTGGGG
ATGAGTTTGGTGGTTTCGGTTTTGGAAGAGAGGTTTGGGTGGGATGCAATATTTATCGGGTCAGATTTGATGGAGGGGAAGCGGGTTTGTGGGTGGGTGT
TATCGGGTCTGATGGGTTTGGTTACGGGTTTGATTGGGTGGAAAATGGAGGGGTTGAAGATGGACAGTGAGGATTTGGCGAAGAAAACAAGATGGACGGC
CGTGATGTTGTTGAAAGGGTGGGAGGCGGTGGGGTTGGCAGTTTTGTACGGGGCAGTAATGGTCTGGGGTTATGTTGTGGCCACCGTGTTTTACTGTGAG
TGCAGAAAACAGCATGTCGTCTGGGAAGTAGAGGGTGGGAGTGTTGATGTTTGA
AA sequence
>Potri.018G097900.1 pacid=42801766 polypeptide=Potri.018G097900.1.p locus=Potri.018G097900 ID=Potri.018G097900.1.v4.1 annot-version=v4.1
MPHPTTVINPKISSTPAIICSCLIFQPLQIFFINKQIFIFIFALLALPLSLLFFSRSLAFHPVQSQILHLEFIAALSPTRFEARHVWKESRETAIALLHC
NFLYFVPSFTLSLLAAVSSVVSAESGYHRNPIGVKSALNAVKSTWRRTLVTSIFVYVILFCYSSVPRTLWSLTGGGVFGSGFVIWVVGSAVEIYLMVVLG
MSLVVSVLEERFGWDAIFIGSDLMEGKRVCGWVLSGLMGLVTGLIGWKMEGLKMDSEDLAKKTRWTAVMLLKGWEAVGLAVLYGAVMVWGYVVATVFYCE
CRKQHVVWEVEGGSVDV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16850 unknown protein Potri.018G097900
[exp]
0 1
AT3G18420 Protein prenylyltransferase su... Potri.008G142980
[exp]
2.82 0.9223
AT2G40620 bZIP AtbZIP18 Basic-leucine zipper (bZIP) tr... Potri.019G130000
[exp]
4.00 0.9331
AT4G14650 unknown protein Potri.008G159200
[exp]
6.48 0.9175
AT5G61480 PXY, TDR TDIF receptor, PHLOEM INTERCAL... Potri.003G107600
[exp]
6.92 0.9183
AT1G69230 SP1L2 SPIRAL1-like2 (.1.2) Potri.017G095200
[exp]
8.94 0.9178
AT5G60980 Nuclear transport factor 2 (NT... Potri.017G094600
[exp]
9.05 0.8890
AT5G60150 unknown protein Potri.005G131500
[exp]
9.64 0.8993
AT2G36570 Leucine-rich repeat protein ki... Potri.006G117200
[exp]
10.24 0.9197
AT1G53750 RPT1A regulatory particle triple-A 1... Potri.018G056600
[exp]
12.12 0.9083
AT3G56810 unknown protein Potri.006G026600
[exp]
13.74 0.9162

Potri.018G097900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.