Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18670 87 / 9e-22 RING/U-box superfamily protein (.1) AT4G30370 84 / 1e-20 RING/U-box superfamily protein (.1) AT2G42360 65 / 6e-13 RING/U-box superfamily protein (.1) AT2G44578 61 / 4e-12 RING/U-box superfamily protein (.1) AT3G20395 62 / 6e-12 RING/U-box superfamily protein (.1) AT1G74410 61 / 1e-11 RING/U-box superfamily protein (.1) AT2G27940 61 / 1e-11 RING/U-box superfamily protein (.1) AT2G44581 59 / 1e-11 RING/U-box superfamily protein (.1) AT4G35840 59 / 6e-11 RING/U-box superfamily protein (.1) AT5G66070 58 / 2e-10 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098100 [exp] 196 / 8e-65 AT2G18670 91 / 2e-23 RING/U-box superfamily protein (.1) Potri.006G175700 [exp] 170 / 4e-54 AT2G18670 91 / 1e-22 RING/U-box superfamily protein (.1) Potri.001G235100 [exp] 61 / 6e-12 AT1G04360 98 / 3e-24 RING/U-box superfamily protein (.1) Potri.005G108200 [exp] 60 / 2e-11 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.005G244500 [exp] 59 / 5e-11 AT5G42200 149 / 3e-46 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 59 / 7e-11 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.010G010500 [exp] 59 / 8e-11 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.008G054200 [exp] 57 / 1e-10 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.002G017400 [exp] 57 / 1e-10 AT5G42200 154 / 2e-48 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019979 [exp] 100 / 8e-27 AT2G18670 113 / 5e-32 RING/U-box superfamily protein (.1) Lus10015506 [exp] 94 / 1e-24 AT2G18670 102 / 2e-28 RING/U-box superfamily protein (.1) Lus10022223 [exp] 66 / 3e-13 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10008797 [exp] 64 / 1e-12 AT5G40250 77 / 2e-16 RING/U-box superfamily protein (.1) Lus10028406 [exp] 62 / 5e-12 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 62 / 5e-12 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10016163 [exp] 62 / 6e-12 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10021524 [exp] 61 / 2e-11 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10001654 [exp] 59 / 8e-11 AT1G74410 251 / 1e-84 RING/U-box superfamily protein (.1) Lus10021628 [exp] 59 / 1e-10 AT1G74410 250 / 5e-84 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.018G098000.1 pacid=42800774 polypeptide=Potri.018G098000.1.p locus=Potri.018G098000 ID=Potri.018G098000.1.v4.1 annot-version=v4.1 ATGTCTCCTCCTCCTCATCACCACGGTGGTGCACCACCAAAACCAAACCGGAAGTTTATTTTTCTTGTCCTGAAAGCCATAGTAATGATCGCAATAACCA TCCTTTTTTTCGTACTCCTTGGTGTTGCCGCCATCCTCCTCCTCATTCCCACCGCCGCACTCCACCGCCACTCGACTCCATCCTCCAATCCCCCAAAGGG GTTGCCTCTCAAAGACTTAAAGAAGCTCCCGAGATTCAGATTCTCGACTAAGACGACACCTGAAACGGCTGCTGATCAAAGTTCATGTGTGGTTTGTCTT GAAGATATAAAGCAAGGGCAGTGGTGTAGAAACCTTGTTGGCTGTGGTCATGTCTTGCATATGAAATGTGTGGATAGTTGGCTTGTTAAGGTTTCTGCGT GTCCTATTTGCAGGACAAGAGTTGAATTTGATCAAGGCGTAAAAGATAGGCCATCGTGGGACTTTGTTTGGAAAAATGAATTGAATATTGGTAGAATTTT CTCTTTCTTTTTCTAA
AA sequence Show only first row Show all	>Potri.018G098000.1 pacid=42800774 polypeptide=Potri.018G098000.1.p locus=Potri.018G098000 ID=Potri.018G098000.1.v4.1 annot-version=v4.1 MSPPPHHHGGAPPKPNRKFIFLVLKAIVMIAITILFFVLLGVAAILLLIPTAALHRHSTPSSNPPKGLPLKDLKKLPRFRFSTKTTPETAADQSSCVVCL EDIKQGQWCRNLVGCGHVLHMKCVDSWLVKVSACPICRTRVEFDQGVKDRPSWDFVWKNELNIGRIFSFFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18670			RING/U-box superfamily protein...		Potri.018G098000 [exp]	0	1
					Potri.014G185516 [exp]	19.69	0.6644
					Potri.008G224291 [exp]	29.66	0.6615
					Potri.008G225301 [exp]	33.68	0.6595
					Potri.008G224192 [exp]	38.80	0.6584
					Potri.008G224501 [exp]	40.03	0.6578
AT5G47550			Cystatin/monellin superfamily ...		Potri.006G014500 [exp]	41.98	0.6314	Pt-API.1
					Potri.008G224255 [exp]	45.39	0.6555
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.001G342200 [exp]	50.39	0.5431
					Potri.008G224273 [exp]	56.55	0.6524
					Potri.018G115200 [exp]	59.28	0.6480

Compare expression of checked genes

Potri.018G098000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.