Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18670 91 / 3e-23 RING/U-box superfamily protein (.1) AT4G30370 85 / 5e-21 RING/U-box superfamily protein (.1) AT5G41400 62 / 2e-12 RING/U-box superfamily protein (.1) AT2G42360 62 / 6e-12 RING/U-box superfamily protein (.1) AT4G09100 59 / 1e-11 RING/U-box superfamily protein (.1) AT1G74410 60 / 3e-11 RING/U-box superfamily protein (.1) AT2G44578 59 / 3e-11 RING/U-box superfamily protein (.1) AT2G42350 59 / 8e-11 RING/U-box superfamily protein (.1) AT3G16720 59 / 1e-10 ATL2 TOXICOS EN LEVADURA 2 (.1) AT3G20395 58 / 1e-10 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098000 [exp] 223 / 2e-75 AT2G18670 87 / 6e-22 RING/U-box superfamily protein (.1) Potri.006G175700 [exp] 218 / 5e-73 AT2G18670 91 / 1e-22 RING/U-box superfamily protein (.1) Potri.001G235100 [exp] 66 / 1e-13 AT1G04360 98 / 3e-24 RING/U-box superfamily protein (.1) Potri.014G043200 [exp] 60 / 8e-12 AT3G60966 76 / 4e-18 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 61 / 2e-11 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.019G130100 [exp] 59 / 3e-11 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 59 / 8e-11 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 58 / 9e-11 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 58 / 1e-10 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019979 [exp] 132 / 1e-39 AT2G18670 113 / 5e-32 RING/U-box superfamily protein (.1) Lus10015506 [exp] 115 / 1e-33 AT2G18670 102 / 2e-28 RING/U-box superfamily protein (.1) Lus10022223 [exp] 67 / 6e-14 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10008797 [exp] 66 / 2e-13 AT5G40250 77 / 2e-16 RING/U-box superfamily protein (.1) Lus10016163 [exp] 61 / 2e-11 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10027736 [exp] 59 / 2e-11 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1) Lus10021524 [exp] 61 / 3e-11 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10041859 [exp] 60 / 3e-11 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10028406 [exp] 60 / 3e-11 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10002194 [exp] 58 / 1e-10 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.018G098100.1 pacid=42801001 polypeptide=Potri.018G098100.1.p locus=Potri.018G098100 ID=Potri.018G098100.1.v4.1 annot-version=v4.1 ATGCCTCCTCCTCACCACCACCATGATCACCACCGTACACACGGTGGAGCACCACCAAAACCAAACCAAGAGTTTCTTTCTTTAATCCTGAAAGCCATAA TAATGACTGCAATAACCATCTTTTTTTTCTTATTCCTTGGCGTTGCCGCCATCCTCCTCCTCTTTGCCACCTCCGCACTCCACCGCCACTCGACTACATC CTCCAATTCCCCGAAGGCGTTGCCTCTCAAAGAATTAAAGAAGCTCCCAAGATTCAGATTTTCGACTAAGACGAGACCCGAAACGGGTGCTGATCAAAGT TCATGTGTGGTTTGTCTTGAAGAGATAAAGCAAGGGCAGTGGTGTCGAAACCTTGTTGGCTGTGGTCATGTGTTTCATAGGAAATGTGTGGATGCGTGGC TTGTCAAGGTTTCTGCATGTCCTATTTGCAGGACGCGAGTTGAATTGGATCAGGGCGTAAAAGATAGGCCATTGTGGGACTTTGTTTGGAGAAATGAATT GAGGGTTTGGTAG
AA sequence Show only first row Show all	>Potri.018G098100.1 pacid=42801001 polypeptide=Potri.018G098100.1.p locus=Potri.018G098100 ID=Potri.018G098100.1.v4.1 annot-version=v4.1 MPPPHHHHDHHRTHGGAPPKPNQEFLSLILKAIIMTAITIFFFLFLGVAAILLLFATSALHRHSTTSSNSPKALPLKELKKLPRFRFSTKTRPETGADQS SCVVCLEEIKQGQWCRNLVGCGHVFHRKCVDAWLVKVSACPICRTRVELDQGVKDRPLWDFVWRNELRVW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18670			RING/U-box superfamily protein...		Potri.018G098100 [exp]	0	1
AT4G35870			early-responsive to dehydratio...		Potri.007G063700 [exp]	3.16	0.7520
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.014G196200 [exp]	14.83	0.7778
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Potri.008G065800 [exp]	20.97	0.7512
AT1G06320			unknown protein		Potri.005G202500 [exp]	23.87	0.7450
AT3G54040			PAR1 protein (.1)		Potri.006G094300 [exp]	32.58	0.7579
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G262900 [exp]	50.91	0.6399
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Potri.006G150600 [exp]	50.98	0.7340	CDA1.1
AT5G55150			Protein of unknown function (D...		Potri.003G127700 [exp]	53.18	0.6955
AT5G58375			Methyltransferase-related prot...		Potri.019G127900 [exp]	67.82	0.6786
					Potri.019G129820 [exp]	70.53	0.7281

Compare expression of checked genes

Potri.018G098100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.