Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30380 122 / 4e-37 EXLB2 Barwin-related endoglucanase (.1) AT2G18660 78 / 3e-19 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT5G39310 48 / 3e-07 ATHEXPALPHA1.19, ATEXP24, ATEXPA24 EXPANSIN 24, expansin A24 (.1) AT5G39260 47 / 5e-07 ATHEXPALPHA1.20, ATEXP21, ATEXPA21 EXPANSIN 21, expansin A21 (.1) AT2G45110 45 / 4e-06 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G69530 44 / 4e-06 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT5G39270 43 / 2e-05 ATHEXPALPHA1.15, ATEXP22, ATEXPA22 EXPANSIN 22, expansin A22 (.1) AT5G39290 42 / 2e-05 ATHEXPALPHA1.16, ATEXP26 EXPANSIN 26, expansin A26 (.1) AT2G40610 42 / 2e-05 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G39280 42 / 5e-05 ATEXP23, ATHEXPALPHA1.17, ATEXPA23 EXPANSIN 23, expansin A23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176300 [exp] 135 / 3e-42 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.003G218300 [exp] 127 / 8e-39 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 108 / 1e-31 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G101600 [exp] 105 / 3e-30 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.018G029100 [exp] 94 / 2e-25 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G252200 [exp] 92 / 6e-25 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.006G249500 [exp] 79 / 2e-19 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.018G031901 [exp] 77 / 5e-19 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G155000 [exp] 66 / 2e-14 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019978 [exp] 118 / 4e-35 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10042435 [exp] 113 / 7e-33 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10026232 [exp] 111 / 4e-32 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10031759 [exp] 91 / 4e-24 AT2G18660 107 / 1e-30 plant natriuretic peptide A (.1) Lus10030078 [exp] 85 / 1e-21 AT2G18660 84 / 3e-21 plant natriuretic peptide A (.1) Lus10031760 [exp] 74 / 2e-18 AT4G30380 72 / 1e-17 Barwin-related endoglucanase (.1) Lus10013118 [exp] 76 / 3e-18 AT4G30380 67 / 5e-15 Barwin-related endoglucanase (.1) Lus10020131 [exp] 66 / 4e-14 AT2G18660 59 / 2e-11 plant natriuretic peptide A (.1) Lus10042436 [exp] 63 / 5e-14 AT2G18660 53 / 2e-10 plant natriuretic peptide A (.1) Lus10026931 [exp] 66 / 7e-14 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.018G098200.1 pacid=42801590 polypeptide=Potri.018G098200.1.p locus=Potri.018G098200 ID=Potri.018G098200.1.v4.1 annot-version=v4.1 ATGGCAACTGCTACCCGTGTGTTGTTTTTTATGGGGCTTGTCATCAGCCTGGTCTCAGTAGCTTCTGCCATTTCCGGGACTGCCACTTACTACAACGTTT ATGTTCCATCTGCATGCTATGGATACCAAGATCAGGGTGTGATGATAGCGGCTGCAAGCGATGGACTTTGGGACAATGGTGCTGCATGCGGGAGAATGTA CAAGGTGACCTGCCAAGGTCCTACAAACGCCGGTGTTCCTCAGCCCTGCAAAGATGGCAGCGTCACTGTCAAGATTGTTGATCGATGCCCATCACCCGGA TGTCAAGCAACCATTGATCTCTCTCAAGAAGCCTTCTCTCAGATTGCTGACCTTAACGCTGGAAAAATTAACATTGATTACACCCAAGTTTGA
AA sequence Show only first row Show all	>Potri.018G098200.1 pacid=42801590 polypeptide=Potri.018G098200.1.p locus=Potri.018G098200 ID=Potri.018G098200.1.v4.1 annot-version=v4.1 MATATRVLFFMGLVISLVSVASAISGTATYYNVYVPSACYGYQDQGVMIAAASDGLWDNGAACGRMYKVTCQGPTNAGVPQPCKDGSVTVKIVDRCPSPG CQATIDLSQEAFSQIADLNAGKINIDYTQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.018G098200 [exp]	0	1
AT5G16340			AMP-dependent synthetase and l...		Potri.019G068100 [exp]	2.44	0.9015
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221900 [exp]	5.74	0.8861
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G023900 [exp]	7.87	0.8893	CHI3.7
AT3G47800			Galactose mutarotase-like supe...		Potri.017G080200 [exp]	7.93	0.8577
AT2G17500			Auxin efflux carrier family pr...		Potri.005G099300 [exp]	10.00	0.8630
					Potri.001G388900 [exp]	11.09	0.7702
AT2G34930			disease resistance family prot...		Potri.010G107000 [exp]	14.45	0.8166
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.011G131300 [exp]	22.73	0.8351
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.009G083300 [exp]	24.73	0.8170
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Potri.012G006300 [exp]	29.94	0.8063

Compare expression of checked genes

Potri.018G098200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.