Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATCHX3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 470 / 3e-154 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 455 / 1e-148 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT1G08140 447 / 1e-145 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT2G13620 427 / 7e-138 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G08150 416 / 2e-133 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT3G44930 405 / 7e-130 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT2G28180 402 / 8e-128 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT2G28170 399 / 4e-127 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT3G44910 395 / 4e-126 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT3G44920 387 / 9e-123 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176400 [exp] 1022 / 0 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.018G098600 [exp] 439 / 1e-142 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.006G176800 [exp] 421 / 3e-137 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.007G105200 [exp] 422 / 1e-135 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 410 / 3e-131 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G182900 [exp] 401 / 2e-128 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G099000 [exp] 372 / 6e-117 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G183000 [exp] 370 / 2e-116 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G171200 [exp] 355 / 1e-110 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041344 [exp] 494 / 9e-164 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10043128 [exp] 478 / 2e-157 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10037374 [exp] 460 / 7e-151 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021412 [exp] 420 / 2e-135 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016153 [exp] 420 / 3e-135 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10030013 [exp] 419 / 2e-134 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 419 / 5e-134 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10021413 [exp] 399 / 6e-127 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10016152 [exp] 377 / 4e-119 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10013423 [exp] 375 / 9e-118 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.018G098300.1 pacid=42802233 polypeptide=Potri.018G098300.1.p locus=Potri.018G098300 ID=Potri.018G098300.1.v4.1 annot-version=v4.1 ATGGATCTTCATTCGAATCATACGACAGGAGGAGTACATTTAAATAAAACACAGACGAAAAAATGCACAAGCATACCACCAAATGTAAATTCAAATGGTT GGCTTCAAAATGAGCATTCGCTGACCGCTTCGTTGCCAATATTGGAGCTGCATATGTTTGCAATATTTCTCATCAGCCATGGTTGTCATTTCATTCTTAA GCGATACGGCATCCATATCTTGGTTTCGCAGATTCTTGCTGGAGTGATCGTTGGAACAACAGGCCTTGGACATCAATCAGATTACACAAGGATCTTTTTA ACTGTTGACAGCAAACAAATACTTGGCACATTAGCTGGATTGGGTTACCAACTCTTTGGATTTATAAATGGAATTAAGATGGATATAGCCTTGGTAAGAA AAACAGAGAAAATGGCAATCTACAGTGGTATATTATCTATGGTGATTCCTGTAGTACTTGGTGGGGTAACTGGGAGGATGGTCAGCAAGTACTGGAATCT CGACAAACTAGACAGGCTCTCGCTCATCTTGGTGATGTTGGTGCAATCTATGACTCCATTTCCTGTCATCTGTAGCTTCATCGGTGACCTTAAACTGACG AATTCTGAACTTGGCAGACTTGGACTGTCTTCAGTGCTAACCAGTGAAATGCTGACCCAGGTTCTTGCACTAGTTGCTTTCTTTATAGGCATTGCCTACA AGCAGCGAGCACAAGCAGCTATCGAAAGCGTTGTAATATCTGTAGCCTTTCTTGTTGTAGTTTTATATGTGGTGAGGCCGGCAATGTTCTGGGTGATCAA ACAAACACCCAAAGGAAGGCCTGTGAAAGATTTATACACAGACATCATCATTTTCGGTGCCTTGGCTTCTGGTGCATTATTTAATTATATTGGTCTAAAT GTGTTCCTTGGATCACTTGTTTTCGGATTAGCTGTACCAGCAGGACCTCCACTTGCATCAGCTGTAGTCGAGAAGATCGAATGCATTGTCACTGGAGTGC TCGTACCTCTTTTTATGGCCATGTGCACGATGGGAGCAGATCTCCTAAAGATCGATTTTGATGACTATATACTGAAGAGCACTGCTATCGTCGTCTTTGT AGTCATCTTGGCCAAATTCGGTGCTTACTTGGTACCTCTCTTGTATTTCAAGTTGCCAAAACAGGATGCCTTGGCACTTGCTTTCCTGATAAGTACCAAA GGAATCGTTGAGCTTGGCTCATTTACTTACATGAGAGAACTAGGGATTCTGACAGAGGGGATGTTCGCTTTCTTGGTAATTACAGTTCTATTGTCAGCAA CGATCTCATCATTCGTTGTGAACTGGGTTTATGATCCGTCAAGGAAGTATGCAGGTTATCAGAAGAGAAACATTATGCATAGCAAAGAGCTCCGCATACT AACATGCATTTACAGACCAGATAACACAACCATCATCATCAATTTTATCAAATCCTTGTGTCCAACTATACAGAGCCCATTTTCTGTTAGTGTACTTCAC CTCATCAAGATCAGTGGCCGAGCCTCCCCTATGTTCATTTCTCACCAAATGCAGAAAAAAACGGTCTCTCTGCACTCCATCTCTGGGAATGTCATTCTCT CTTTTAAACACTTCCAACAAAATTATGGCGACGCAGTTTCTGTAAATGTCTTCACAGCAATCTCTCCACCCAAATTCATGCACGAGGACATATGCACACT TGCATTGGATGAACTTGCATGTTTTTTAGTGCTTCCATTTCATAAAAAATGGCTTGTTGATGGGTCTATTGAATCAGAGGACTCTACTCTGAGGACTCTA AATTGCTGTGTCCTTGAGAGAGCACCGTGCTCTGTAGGGATCCTCATTGACCGTGGGAATCAAGTAAAGTCCATTTTCTTGGAATCATCAAGAGGGCCAT CCCTTCTTGTTGTTGTGTTATTCTTCGGGGGCAACGATGATCAAGAAGCTCTTGTGTTAGCTAAACGCATGTCCCAGAATAGGAACATCAGCATAAAAAT CGCTCGCTTCATTCCCTCAACTGATGAGCTCGAAATTAATCGGGACAGCATGCTAGAATCTCAGGCGTTGAACTATATTATGCATGACTACACAGAGCAT GAAACAGTGGATTACATTGAAGAGAGGGTAAGCGACGGCCTGGAAACTTCAAAGACAATTCGATCTATGCTAGATAAATACGACCTTTTTATTGTTGGGA GACGGAAAGATATACAAACACCACAAACAGCAGGTCTTGACGATATGAATGAATACCCAGAGCTTGGTGTCATTGGAAGCCTGCTCGCATCTATGGATAC CACTGAAAAGTATTCGGTCCTGGTTGTAAAGCAACAGGTAGCTTTGTAG
AA sequence Show only first row Show all	>Potri.018G098300.1 pacid=42802233 polypeptide=Potri.018G098300.1.p locus=Potri.018G098300 ID=Potri.018G098300.1.v4.1 annot-version=v4.1 MDLHSNHTTGGVHLNKTQTKKCTSIPPNVNSNGWLQNEHSLTASLPILELHMFAIFLISHGCHFILKRYGIHILVSQILAGVIVGTTGLGHQSDYTRIFL TVDSKQILGTLAGLGYQLFGFINGIKMDIALVRKTEKMAIYSGILSMVIPVVLGGVTGRMVSKYWNLDKLDRLSLILVMLVQSMTPFPVICSFIGDLKLT NSELGRLGLSSVLTSEMLTQVLALVAFFIGIAYKQRAQAAIESVVISVAFLVVVLYVVRPAMFWVIKQTPKGRPVKDLYTDIIIFGALASGALFNYIGLN VFLGSLVFGLAVPAGPPLASAVVEKIECIVTGVLVPLFMAMCTMGADLLKIDFDDYILKSTAIVVFVVILAKFGAYLVPLLYFKLPKQDALALAFLISTK GIVELGSFTYMRELGILTEGMFAFLVITVLLSATISSFVVNWVYDPSRKYAGYQKRNIMHSKELRILTCIYRPDNTTIIINFIKSLCPTIQSPFSVSVLH LIKISGRASPMFISHQMQKKTVSLHSISGNVILSFKHFQQNYGDAVSVNVFTAISPPKFMHEDICTLALDELACFLVLPFHKKWLVDGSIESEDSTLRTL NCCVLERAPCSVGILIDRGNQVKSIFLESSRGPSLLVVVLFFGGNDDQEALVLAKRMSQNRNISIKIARFIPSTDELEINRDSMLESQALNYIMHDYTEH ETVDYIEERVSDGLETSKTIRSMLDKYDLFIVGRRKDIQTPQTAGLDDMNEYPELGVIGSLLASMDTTEKYSVLVVKQQVAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.018G098300 [exp]	0	1	Pt-ATCHX3.2
AT4G17690			Peroxidase superfamily protein...		Potri.012G076500 [exp]	2.64	0.6934
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.005G107200 [exp]	3.46	0.6999
					Potri.017G071366 [exp]	4.00	0.6855
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.004G043600 [exp]	5.09	0.7100
					Potri.006G047250 [exp]	7.14	0.7040
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Potri.002G228700 [exp]	11.66	0.6178
					Potri.010G023851 [exp]	14.66	0.5233
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	18.70	0.6421
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	19.28	0.6500
AT5G28780			PIF1 helicase (.1)		Potri.009G007400 [exp]	21.54	0.5607

Compare expression of checked genes

Potri.018G098300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.