Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57740 612 / 0 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G07270 446 / 9e-153 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT2G28840 121 / 1e-29 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT3G12360 76 / 1e-14 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G02620 73 / 2e-13 ATANK1, ANK1 ankyrin-like1 (.1) AT5G14230 72 / 4e-13 unknown protein AT1G07710 68 / 5e-12 Ankyrin repeat family protein (.1) AT2G31820 65 / 9e-11 Ankyrin repeat family protein (.1) AT5G60070 63 / 3e-10 ankyrin repeat family protein (.1) AT3G04710 62 / 6e-10 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176600 [exp] 889 / 0 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.012G139100 [exp] 456 / 8e-157 AT5G07270 782 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.015G141400 [exp] 454 / 4e-156 AT5G07270 795 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.001G238800 [exp] 149 / 1e-39 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.009G030000 [exp] 133 / 6e-34 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.002G213200 [exp] 76 / 1e-14 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 76 / 3e-14 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 75 / 3e-14 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 71 / 8e-13 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019974 [exp] 771 / 0 AT5G57740 630 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10015503 [exp] 754 / 0 AT5G57740 614 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10005754 [exp] 421 / 4e-143 AT5G07270 753 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10027441 [exp] 396 / 3e-133 AT5G07270 719 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10016561 [exp] 137 / 5e-35 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10040829 [exp] 91 / 1e-19 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10003308 [exp] 74 / 1e-13 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10036033 [exp] 62 / 3e-11 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10009696 [exp] 61 / 8e-11 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10003748 [exp] 64 / 2e-10 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.018G098400.4 pacid=42800731 polypeptide=Potri.018G098400.4.p locus=Potri.018G098400 ID=Potri.018G098400.4.v4.1 annot-version=v4.1 ATGAAATTTCTGAGCATCATGGGCAATTCACTTGGTTGTTCTGCCTCTGGAGAACGTTTGGTTTCGGCTGCAAGAGATGGGGATATTCAAGAAGCTAAGG CTTTATTGGAATACAATCCAAGGCTTGCAAGGTACTCAACATTTGGTGTTCGAAATTCTCCACTCCATTACTCTGCAGCTCAGGGTCACCATGAGATAGT TTCTCTCTTGCTTGAGTCTGGAATTGATATCAATCTGAGGAATTATCGTGGTCAGACTGCTTTGATGCAAGCTTGTCAACATGGTCACTGGGAGGTTGTG CTGACTTTGATGCTTTTTAAAGCCAATATTCACAGAGCAGATTATCTTAATGGGGGTACTGCACTTCACTTGGCTGCTTTGAATGGTCATTCTCGATGCA TACGCCTCCTCCTTGCAGACTATATACCTAGCATAGCTGATTGTTGGGAGATTTTAAGTAAGGGATCTAAGGACAATGAATCCATCTCTGAGTTTGATGG AAGTGCTCTTCGCGAGGTAATCAATAGACCTGCTGATGGAGGCATAACTGCTTTGCATATGGCAGCCCTAAATGGGCATGTTGAAAGCGTGCAGTTACTC TTGGACTTGGGAGCTTCCGTTTATGAGGTCACCGTGGAAGATGGAACTACTATCGATCTAATAGGTGCTGGAAGCACGGCTCTTCACTATGCTGCATGTG GTGGAAATTCACAATGTTGTCAAATTTTGATTGCCAGGGGTGCTAATTTGACGGCTGAGAATGCAAATGGGTGGACTCCATCGATGGTTGCTTGTTCGTG GCACAGAAATGAACTTGAGGAGATTCTTAGCTCACAACCAGGGAACCGGTCTCAAATCTGTCCTTCTTCATATCTATCTATTCCCTTTATGAGCATTGTC AAAATTGCCAGAGAATGTGGATGGAGGAACAATGATTCCCTCCCTACATGTGAGGATGCATGTGTGGTTTGTTTGGAAAGGAAGTGCACAGTTGCTGCAG AAGGCTGTAGACATGAATTTTGCACACGATGTGCATTGTATCTTTGTTCTGCGATCTGTACCTCAACTGTTGCTCAAGGCCCAACAGGGTCAGTTGCCTG TCCTCTCTGCCGGCATGGCATAGTTTCATTTGTCAAGCTTCCTGGAACAAAGCCATTGGTTAAAGCTATTGCCAGAACAAGTTTATCTCTATCATTTTGC ACATGTTCGGGTGAAGAACAAGATTTCACTTCAATGAAAACCCTACTCTGCAAGCCTGATTTCCAATGCACCAGAATTTCCCCGCTTTCATCTTCGTTCC GCTCTTTAAGTTGCCGGAAGTTTCCGTCAATGAATTTCAATGCCAGCCGATGCATGGGAACTTCAGATACAAGTCCATCTTTGGTTCCTTGTACTATTGA TCGGAACCTGCGTGAATGCCTAGTCAGGTGTTCGAGATCAAGAATTAGACAATCGACTTCTAACACAGAGCGCAGGAGGTCTTGGTTATCTGCACTCAAC CAGTATGTAACTACAGGAACTGGGTGCTAA
AA sequence Show only first row Show all	>Potri.018G098400.4 pacid=42800731 polypeptide=Potri.018G098400.4.p locus=Potri.018G098400 ID=Potri.018G098400.4.v4.1 annot-version=v4.1 MKFLSIMGNSLGCSASGERLVSAARDGDIQEAKALLEYNPRLARYSTFGVRNSPLHYSAAQGHHEIVSLLLESGIDINLRNYRGQTALMQACQHGHWEVV LTLMLFKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSIADCWEILSKGSKDNESISEFDGSALREVINRPADGGITALHMAALNGHVESVQLL LDLGASVYEVTVEDGTTIDLIGAGSTALHYAACGGNSQCCQILIARGANLTAENANGWTPSMVACSWHRNELEEILSSQPGNRSQICPSSYLSIPFMSIV KIARECGWRNNDSLPTCEDACVVCLERKCTVAAEGCRHEFCTRCALYLCSAICTSTVAQGPTGSVACPLCRHGIVSFVKLPGTKPLVKAIARTSLSLSFC TCSGEEQDFTSMKTLLCKPDFQCTRISPLSSSFRSLSCRKFPSMNFNASRCMGTSDTSPSLVPCTIDRNLRECLVRCSRSRIRQSTSNTERRRSWLSALN QYVTTGTGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Potri.018G098400 [exp]	0	1
AT5G21140		EMB1379	embryo defective 1379 (.1)		Potri.004G195600 [exp]	17.54	0.7118
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Potri.008G133900 [exp]	20.68	0.7351
AT1G04960			Protein of unknown function (D...		Potri.014G160800 [exp]	26.72	0.7166
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Potri.016G072700 [exp]	38.15	0.6644
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Potri.013G107950 [exp]	44.58	0.6627
AT3G62190			Chaperone DnaJ-domain superfam...		Potri.002G188300 [exp]	70.78	0.6591
AT2G43210			Ubiquitin-like superfamily pro...		Potri.017G036600 [exp]	74.56	0.6469
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Potri.008G041300 [exp]	86.99	0.6437
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.001G213400 [exp]	98.04	0.6525
AT3G20800			Cell differentiation, Rcd1-lik...		Potri.001G359300 [exp]	107.77	0.6297

Compare expression of checked genes

Potri.018G098400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.