Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44900 388 / 7e-123 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 366 / 2e-114 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT2G28180 330 / 8e-101 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT5G22910 315 / 2e-95 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT1G08150 306 / 7e-92 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT3G44930 304 / 2e-91 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT2G13620 302 / 1e-90 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G08140 302 / 2e-90 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT3G44910 294 / 6e-88 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT1G06970 271 / 3e-79 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176800 [exp] 717 / 0 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.018G098300 [exp] 437 / 7e-142 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 430 / 2e-139 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G105200 [exp] 320 / 5e-97 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 299 / 2e-89 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G182900 [exp] 287 / 3e-85 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.019G123700 [exp] 287 / 8e-85 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 275 / 6e-81 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.010G171200 [exp] 272 / 1e-79 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037374 [exp] 388 / 4e-123 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 382 / 6e-121 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016153 [exp] 375 / 6e-118 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10043128 [exp] 367 / 5e-115 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021412 [exp] 358 / 4e-112 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10021413 [exp] 355 / 3e-110 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10016152 [exp] 311 / 2e-94 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10030013 [exp] 296 / 7e-88 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 296 / 1e-87 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10026408 [exp] 272 / 3e-79 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.018G098600.1 pacid=42802058 polypeptide=Potri.018G098600.1.p locus=Potri.018G098600 ID=Potri.018G098600.1.v4.1 annot-version=v4.1 ATGGATCCCTTAAAACTGTCAAATGTAATCGTCAATTCAACTGGAGAATTTCATGAATCGGTCACTTGTTTCACCCTACCTCCAAAGGTAAATTCACCTG GATTGGAAGAGTACTTGGTCAACAGCAAATTTGAACCATTGAGTTATACATTGCCAAATCTGGAGGTGCTCATGGCGGTGGTATTTGGTATCACCCAGGT CTTGAATTTTGCGTTCAGAAGAATAGGACTGCCATCGCTAATCTCACAGATTCTTGCAGGCCTGATTTTCAATCCAGCAGTGCTTCCTCATAGTGTTTCA AAGGTTCTATTTTCAAGGGCAGGTGTAGAAAATCTTGTTACAGTAGCAACAATGGGCTACCAGTTGTTTATGTTTCAAAGTGGAGTAAAAATGGATATGG AGATGTTAAGAAATGTAGAAGGAAAGGTCTTACTTCTTGGTGTTTCTTGTGTATTATTACCACTTCTACTCGGTCTAGCAACCTTAACAGTTATGACCAA GAAAGAGTATTTAATGAATTTCTTTATTGCAACAGTGTATTCGATGTCTTCATTTCCTGTGATAGTTAGCCTTCTCCATGAGCTAAAACTTCTAAACTCA CAACTCGGCCGGTTAGGACTGTCAACAGCGCTAGTTAGTGACCTTGTTGGCCTTCTGCTTCTTATTGTTTCATCTTTGCTGAGAGCAGCAGACCACGAGC TCAATGAAACCGGAGATGGTGTAATAGGGATGCTTGTTTTCATCCTTACTGTTGCATTGATTCTTAGACCAGCATTGAATCTTCTAGCAAGAAAGATGTG TGATAGCCTGAAGGAATTGTACGTTTACTTCATCATTTCACTGTTCCTGGGTTCTGTGTTGCTTTCACATATTAATGGATTGGCTGTTTTTTATGGGCCC TTTATTGTTGGTCTAGCTGTGCCATCTGGACCGCCACTGGGATCTTCTGTTTTGGAGAAGTTCGAAGCAATTACAGGTTACATCCTTGCAATTTTTGTCA CATCATGTGGCATGAGGGTGGATTTTGCAAACACAAAATTTGACGAGATCAAGTTATCAATCGCTGCAGTTGCTCTTACTGTGATTACCTCGGCCAAATT CTTGGTGTGTTACGTTTCACATTCATTCTTTTGGGAATCGCCAACAAAAAATGGTGCTGCCTTTGCCCTCATAATGTGTGCGAAAGGCGTCGTTGAGTTG GCCTTGTACAGTTTCTTGGATGATGCTCAGGCAATAATGGATGATGCTTTCATTTTCATGGTTGGTACAGTCATCGTCTTTGGCAGCGTTGTACCAATTC TTGTGAGAAGGCTATACAATCCTGAAAAGAGATATGTAGGATGCCTGAAAAGGAATCTCATAGAGTCCAGGCAAAATTCAGAGCTGCAAATTATTTCTTG TATCCATGCACCAGGAGATGTGAATGCGGTAATAAATCTTCTTGATGCCTCCTGTGGTGGAGATAGCCCTACTGCGGTTACAGTGCTTCACCACATCAAG CTTGTCGGGCAATCTACTCCACTCTTCATTTCCCACCGAAAGGGGAGGGTAATAGTCTGTGATTATTTACATTCAATGAACGTCATTCGTTTGTTCAACG AATTCGAGCAAAACAGTCGTGGATCGTTGTCGGTGAATGCAGTCACAGCAGTCTCTCTGCTGAAATTCATGTATGATGATATTTTCTCACTGGCAGTGGA GAAGCTCGCATCTCTTATAATACTTCCATTTCACATTAGATGGTGGAAACAAGATGGTTCAATTCAATCAGAGGACCAAAGCCTAAGGGAATTGAATAAC AGGGTCCTTGAAAAGGCACCTTGCTCTGTAGGGATACTAGTTGATAGATGCAGTAACCGGCGGCTAGTCTACAAAGAAGATGCGCCAGCAGTAATCAATG TTGCTATGATCTTCCTGGGAGGTGATGATGATAGAGAAGCCTTAACTTTTGCTATTCGCATGGCACAAGACACCAGGGTTAAATTGTGTGTGGCACATCT CCTTCCAGCAAACTTGAACGAACTGGAAGCAAAACAAGATAATGTGGCGTTGAAGGGAGTGAAGGAAAAGGATCATATTACGTTTGGAGAAGAAGTGGTA GATGGAGCAGCAACAACTGTTTCACTTATTAGATCCATGGTGCCTGAATACGAGCTTATAATTGTGGGTCGAAGAGACAACTTGGATGGCATTACCCCAC AGACAAGTGGTCTAAGACAATGGTGTGAGTATCCGGAGCTGGGGCTAATAGGAGACCTCATCATATCGGATGACAACAAGGCAGACTGTTCCTTATTTGT TGTTCAGCAGGCACGAGAACAAGTAGAAGAACAGCAACAACAAATGCCTTAG
AA sequence Show only first row Show all	>Potri.018G098600.1 pacid=42802058 polypeptide=Potri.018G098600.1.p locus=Potri.018G098600 ID=Potri.018G098600.1.v4.1 annot-version=v4.1 MDPLKLSNVIVNSTGEFHESVTCFTLPPKVNSPGLEEYLVNSKFEPLSYTLPNLEVLMAVVFGITQVLNFAFRRIGLPSLISQILAGLIFNPAVLPHSVS KVLFSRAGVENLVTVATMGYQLFMFQSGVKMDMEMLRNVEGKVLLLGVSCVLLPLLLGLATLTVMTKKEYLMNFFIATVYSMSSFPVIVSLLHELKLLNS QLGRLGLSTALVSDLVGLLLLIVSSLLRAADHELNETGDGVIGMLVFILTVALILRPALNLLARKMCDSLKELYVYFIISLFLGSVLLSHINGLAVFYGP FIVGLAVPSGPPLGSSVLEKFEAITGYILAIFVTSCGMRVDFANTKFDEIKLSIAAVALTVITSAKFLVCYVSHSFFWESPTKNGAAFALIMCAKGVVEL ALYSFLDDAQAIMDDAFIFMVGTVIVFGSVVPILVRRLYNPEKRYVGCLKRNLIESRQNSELQIISCIHAPGDVNAVINLLDASCGGDSPTAVTVLHHIK LVGQSTPLFISHRKGRVIVCDYLHSMNVIRLFNEFEQNSRGSLSVNAVTAVSLLKFMYDDIFSLAVEKLASLIILPFHIRWWKQDGSIQSEDQSLRELNN RVLEKAPCSVGILVDRCSNRRLVYKEDAPAVINVAMIFLGGDDDREALTFAIRMAQDTRVKLCVAHLLPANLNELEAKQDNVALKGVKEKDHITFGEEVV DGAATTVSLIRSMVPEYELIIVGRRDNLDGITPQTSGLRQWCEYPELGLIGDLIISDDNKADCSLFVVQQAREQVEEQQQQMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Potri.018G098600 [exp]	0	1
AT4G28670			Protein kinase family protein ...		Potri.007G056000 [exp]	22.11	0.7911
					Potri.005G071951 [exp]	27.56	0.7116
AT3G19080			SWIB complex BAF60b domain-con...		Potri.007G039350 [exp]	146.23	0.7132
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.001G256600 [exp]	149.81	0.6858
AT5G53540			P-loop containing nucleoside t...		Potri.012G022985 [exp]	154.57	0.6965
					Potri.013G012733 [exp]	158.88	0.6817
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G236951 [exp]	159.60	0.7054

Compare expression of checked genes

Potri.018G098600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.