Plant FIBer expression Database

Potri.018G098700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14850 721 / 0 Alg9-like mannosyltransferase family (.1.2)
AT1G02145 54 / 1e-07 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033341
[exp]
771 / 0 AT5G14850 701 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Lus10033296
[exp]
765 / 0 AT5G14850 697 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Lus10034759
[exp]
665 / 0 AT5G14850 589 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Lus10043256
[exp]
47 / 3e-05 AT1G02145 669 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Lus10019399
[exp]
46 / 6e-05 AT1G02145 712 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03901 Glyco_transf_22 Alg9-like mannosyltransferase family
Representative CDS sequence
>Potri.018G098700.3 pacid=42801020 polypeptide=Potri.018G098700.3.p locus=Potri.018G098700 ID=Potri.018G098700.3.v4.1 annot-version=v4.1
ATGAATCAGAGACGAAATGCATCATCTAAATCACAACCCACTAAACCCTTAATAACCAAAAGCCCTGATATCTCCAAACAAAAAGGATACAAATCCCAGA
AGTCCAATTTCTTTTCGTCTGAAAAGAATATCTTTACACTCTGTTTGGCTTTCCGAATTGCCAATTCGCTGTTGATTCGAACTTATTTCAATCCAGATGA
GCACTGGCAAGCCCTTGAAGTTGCCCATCGAATTGTATTTGGGTATGGTCATTTGACATGGGAATGGAGGAAGGGGATTCGTAGCTATTTCCACCCGTTG
TTGTTTGCTGTGCTGTACAAAGTTCTTGCACTGTTTGGTCTTGATACTCCATGGTTCATGGCTCACGCACCACGGTTGCTGCAAGCCCTGTTTTCTGCAG
TTGGTGATTTATATTTCTACAGACTTTCAAATGCTATCTTTGGCAATTTTGTGGCAAAATGGGCACTTTTTTCTCAATTGGCAAACTGGTTCATGTTTTT
CTGCTTCAACCGTACATTGTCAAATAGTTTGGAAACAGTTCTTACGCTGGTTGGATTATACTACTGGCCCTGTATGAGAGCTTCTCCCAGCAAAGTTCCC
CTGGTTTTAAGGAAGTGGGGTTTGGCTATAGCAGCATTAGCTTGTGCAATCCGGCCAACAAGTGCTATTACATGGGTCTATGTTGGCCTTCTTGAGCTGG
CTGTAACACGTGATAGATTAAAATTCCTTGTTCTGGAGGTGGTCCCCATTGGGGCTTTGGTGCTTGGGCTTTCATGTTTATTGGATCGTTTGATGTATGG
CTCATGGGTCATTGTACCCCTTAATTTTCTCAAGTTCAATTTTCTTTCATCTGGCGGAGATTATTACGGAACTCACAAGTGGCACTGGTACTTCTCTCAA
GGATTTACAGTCATGCTCTTCACATTCTTACCATTTTCAATTGCTGGCAGCATAAAGTCTAAATGCTGGAAGCTCTCTGGACTCATTGCATGGGTTTTAA
TTGTTTACAGTATTCAGGGGCATAAAGAATTCAGGTTTGTGTTGCCTATGCTCCCGATAGCTTTGATGTTCTCTGGATATTCGTTATCTGTTATGGCAAA
ATCTGATTCTGATAGTAGAAGAAAAGGTTCTCCTAACAGTCACATGAAAAGGCCCTCAAAAGTGGGATTTGCCATCTTTTTCTTGCTTGCCACTAACATT
CCGATGGCCTTGTACATGAGCTTGGTTCATCAGAGAGGAACTGAGGATGTCATGATTTATCTATCCAAAGAAGCGCAAAATGAGAAAGTAAAGGGTATCC
TGTTTCTAATGCCCTGCCATGCCACTCCTTACTACTCCACACTGCATTATGATCTGCCAATGCGTATTCTGGATTGTTCTCCAAGTGAAGAGAAAGGAAT
CCCAGATGAGTCAGACCACTTCATGATGGATCCTGTTAGTTTTGTAACACGGATGACAAACGGGTCTTTGCCTAGTCATGTTGTATTATTTGATTCTGAG
GAGAAGTTGTTAAGAGATTTTCTGATTTCACATTCTTTCACAGAGATAAGAAGGTTTTTCCATGCCCACTTCAAGGTGGACCGTGATCTTCAAGCATCAG
TGGTTGTATATGCTTTGGCTAACTAG
AA sequence
>Potri.018G098700.3 pacid=42801020 polypeptide=Potri.018G098700.3.p locus=Potri.018G098700 ID=Potri.018G098700.3.v4.1 annot-version=v4.1
MNQRRNASSKSQPTKPLITKSPDISKQKGYKSQKSNFFSSEKNIFTLCLAFRIANSLLIRTYFNPDEHWQALEVAHRIVFGYGHLTWEWRKGIRSYFHPL
LFAVLYKVLALFGLDTPWFMAHAPRLLQALFSAVGDLYFYRLSNAIFGNFVAKWALFSQLANWFMFFCFNRTLSNSLETVLTLVGLYYWPCMRASPSKVP
LVLRKWGLAIAALACAIRPTSAITWVYVGLLELAVTRDRLKFLVLEVVPIGALVLGLSCLLDRLMYGSWVIVPLNFLKFNFLSSGGDYYGTHKWHWYFSQ
GFTVMLFTFLPFSIAGSIKSKCWKLSGLIAWVLIVYSIQGHKEFRFVLPMLPIALMFSGYSLSVMAKSDSDSRRKGSPNSHMKRPSKVGFAIFFLLATNI
PMALYMSLVHQRGTEDVMIYLSKEAQNEKVKGILFLMPCHATPYYSTLHYDLPMRILDCSPSEEKGIPDESDHFMMDPVSFVTRMTNGSLPSHVVLFDSE
EKLLRDFLISHSFTEIRRFFHAHFKVDRDLQASVVVYALAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G14850 Alg9-like mannosyltransferase ... Potri.018G098700
[exp]
0 1
AT3G24820 BSD domain-containing protein ... Potri.002G242200
[exp]
12.60 0.7491
AT2G18880 VIL3, VEL2 VIN3-like 3, vernalization5/VI... Potri.002G111600
[exp]
12.68 0.6871
AT1G16900 Alg9-like mannosyltransferase ... Potri.011G110800
[exp]
24.65 0.6651
AT5G04550 Protein of unknown function (D... Potri.006G117000
[exp]
25.65 0.6432
AT5G59480 Haloacid dehalogenase-like hyd... Potri.001G242300
[exp]
31.81 0.6699
AT4G15093 catalytic LigB subunit of arom... Potri.018G145550
[exp]
36.18 0.6645
AT3G06600 unknown protein Potri.008G103600
[exp]
40.79 0.6507
AT2G17480 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, S... Potri.005G099200
[exp]
45.71 0.6470
AT2G30110 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-... Potri.009G075700
[exp]
48.49 0.6285
AT1G01370 CENH3, HTR12 CENTROMERIC HISTONE H3, Histon... Potri.014G096400
[exp]
54.58 0.5864 Pt-HTR12.1,HTR904

Potri.018G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.