Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57770 338 / 6e-114 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G14740 59 / 2e-09 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT3G22810 59 / 2e-09 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G042000 [exp] 54 / 1e-07 AT4G32785 159 / 1e-47 unknown protein Potri.005G213800 [exp] 47 / 1e-05 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.002G049200 [exp] 45 / 9e-05 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.010G082400 [exp] 44 / 0.0002 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019972 [exp] 369 / 5e-126 AT5G57770 360 / 1e-122 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10015501 [exp] 365 / 9e-125 AT5G57770 363 / 7e-124 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10009509 [exp] 64 / 2e-11 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014703 [exp] 45 / 5e-05 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [poplar] [flax] Auxin_canalis Auxin canalisation CL0266 [poplar] [flax] PH PF08458 [poplar] [flax] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Potri.018G099000.3 pacid=42802033 polypeptide=Potri.018G099000.3.p locus=Potri.018G099000 ID=Potri.018G099000.3.v4.1 annot-version=v4.1 ATGGATTCAATTATGAAGCCATCTCCCTCTGAGGCACATCCTGAGACAATGGATTTTCTTTCGAGCACTTGGTGCAACTTTGCTGTTCAAGCTCTCCAAC CAGACTTGCAAAACCAGCCGATTATTCTCCTAGATAATCCAATCAAGAAACTCGATTGCGACGTCATGAAACCTCCTTTCTCGAAGATGGACAAGAGTGT CAAAATGGATGATGCCTTCAAGTCTCTGCCACCATGGAAATCCAATGATATGAAGTCATGGATATGGATGCAACAAGCAATGCATCCTGAACTGAACTAC AACAGTTGTTTCCGCAAGAAATGGTTCCCATGGAAAAATATACTGCCCTTTAAGACCATTTCAATAAAGAAATGGTTGAAAGAGATAAAGCTGAAGCGAA AAGAAGAAGAGAGGCTACAAAAAGCTGAAGTACATGCAGCTATATCAGTAGCAGGAGTAGCTGCTGCCTTAGCTGCAATTGCTGCTGAGAACTCCAAGAA AGATGAATCCAGCACTGCCAAGGAGGCTGCCATAGCCTCTGCTGCTGCTTTGGTTGCAGCTAAATGCGCACAAGTCGCAGAAGCAATGGGGGCAAAGAGA GAGCAGCTTAGCAGTGCCATAGGCTCAGCCATGAGTGGCACAAATGCAAGTGACATAGTAACACTCACAGCTGCTGCAACAACTTCATTGAAAGGAGCTG CTACCCTTAAAGCAAGAACAGGATGCAAGAACAGACTAAATGCACCAGTTCTCCCTTTAGAGGATAACAATGACATTGATTTTGACTTTGAGAAGTGTAG ATCAGTACTTGCCAATGGAACAGAGCTCCATGTTGAAACACCTGATGGAAATTTCAGGGTGAGATCTGTGTCTATCATCCTTAGCAGCAAAGCCAAGGTT ATTCTTAAGTTGAGGAAGCTCAATATCCTGAAAGGCAAGAAGGAAAGTATTGTACTGGACTTGCATGCTGAGTTGTACAAAGATTTAGAAGCTGATCGAG AGACTGGTCATACATGTTATCTTATCGTGTTAACAACCAATATGGGGATAATCAAGCTAGATATGGGGGATGATTATCATCGTTACAAGACATGGGCCAC AACCATTAATCACATGCTCATGCTCTCTACTTCTTATGCAAACTATGGGCTTCAATTCTATGAACACTGA
AA sequence Show only first row Show all	>Potri.018G099000.3 pacid=42802033 polypeptide=Potri.018G099000.3.p locus=Potri.018G099000 ID=Potri.018G099000.3.v4.1 annot-version=v4.1 MDSIMKPSPSEAHPETMDFLSSTWCNFAVQALQPDLQNQPIILLDNPIKKLDCDVMKPPFSKMDKSVKMDDAFKSLPPWKSNDMKSWIWMQQAMHPELNY NSCFRKKWFPWKNILPFKTISIKKWLKEIKLKRKEEERLQKAEVHAAISVAGVAAALAAIAAENSKKDESSTAKEAAIASAAALVAAKCAQVAEAMGAKR EQLSSAIGSAMSGTNASDIVTLTAAATTSLKGAATLKARTGCKNRLNAPVLPLEDNNDIDFDFEKCRSVLANGTELHVETPDGNFRVRSVSIILSSKAKV ILKLRKLNILKGKKESIVLDLHAELYKDLEADRETGHTCYLIVLTTNMGIIKLDMGDDYHRYKTWATTINHMLMLSTSYANYGLQFYEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57770			Plant protein of unknown funct...		Potri.018G099000 [exp]	0	1
AT1G54650			Methyltransferase family prote...		Potri.013G044300 [exp]	3.87	0.8214
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Potri.002G151300 [exp]	6.92	0.8249	GA20ox2-1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.004G081466 [exp]	9.79	0.8248
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Potri.009G115300 [exp]	20.24	0.7651	Pt-AGB1.1
AT4G38520			Protein phosphatase 2C family ...		Potri.009G137400 [exp]	27.60	0.7301	Pt-PP2.7
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	27.98	0.7876	Pt-PSPK3.1
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	31.36	0.8101
AT5G59010			Protein kinase protein with te...		Potri.009G039500 [exp]	31.84	0.7668
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Potri.004G099400 [exp]	37.45	0.7754
AT2G03630			unknown protein		Potri.008G096300 [exp]	39.30	0.7591

Compare expression of checked genes

Potri.018G099000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.