Plant FIBer expression Database

Potri.018G099301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G177250
[exp]
88 / 5e-22 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G099301.1 pacid=42800946 polypeptide=Potri.018G099301.1.p locus=Potri.018G099301 ID=Potri.018G099301.1.v4.1 annot-version=v4.1
ATGAAGCAGCTTGAAAAAAACATTATTAAGATAATTTACAAACTTGAAATGATCTTCACTCCGTTATTCAACTCAATAGAGCATCTACCTATTAATATGA
TTTTTACAGGATTTTTTTCCCCGTTATTTTTTCTTCTTTGCTTTGGTGTTCAAAAGAAGAGCAATCCCATTAAGAAAAACAAGAAAAGGTTCCTCGAGAA
AATTGTGGACTACATGAAATCTGATTCTTACATGTTTTCTCCTTTCATCTCGACACCACATATTGCTTCAAAGACCAGCTCTTCTTCTACTACAGTTCCA
ACCAGGAAATTAACCACGAAGGATAATCAATCAACTGTTGAGACATCAAATGTAACAGTAGAAGACCAATTCTCTGAGCTTCCTGAGAAATGCATTTCTG
GCCAGCAGAAGTTCGTGCACAAGGAAACAGTGAAGCACATGGTCTACCAAAGTTGCCGCTCTTCTCTGTCGGATAATTGGATCTTAAAGAACTGA
AA sequence
>Potri.018G099301.1 pacid=42800946 polypeptide=Potri.018G099301.1.p locus=Potri.018G099301 ID=Potri.018G099301.1.v4.1 annot-version=v4.1
MKQLEKNIIKIIYKLEMIFTPLFNSIEHLPINMIFTGFFSPLFFLLCFGVQKKSNPIKKNKKRFLEKIVDYMKSDSYMFSPFISTPHIASKTSSSSTTVP
TRKLTTKDNQSTVETSNVTVEDQFSELPEKCISGQQKFVHKETVKHMVYQSCRSSLSDNWILKN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G099301
[exp]
0 1
AT4G13250 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-... Potri.018G081200
[exp]
5.65 0.9319
AT2G30950 FTSH2, VAR2 VARIEGATED 2, FtsH extracellul... Potri.014G139500
[exp]
9.48 0.9313 Pt-VAR2.3
AT1G22540 Major facilitator superfamily ... Potri.019G079600
[exp]
9.94 0.9056
AT3G19900 unknown protein Potri.010G169700
[exp]
13.26 0.9298
AT1G69870 NRT1.7 nitrate transporter 1.7 (.1) Potri.010G034700
[exp]
13.85 0.8651
AT3G20970 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAI... Potri.008G022000
[exp]
16.30 0.8983
AT2G24820 AtTic55, TIC55-... translocon at the inner envelo... Potri.006G267300
[exp]
20.63 0.9076
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Potri.009G043800
[exp]
20.78 0.9060
AT4G04210 PUX4 plant UBX domain containing pr... Potri.006G270300
[exp]
21.74 0.8753
AT3G07700 Protein kinase superfamily pro... Potri.014G168600
[exp]
21.90 0.8967

Potri.018G099301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.