Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30420 401 / 2e-139 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G28040 317 / 2e-106 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT1G75500 229 / 7e-72 WAT1 Walls Are Thin 1 (.1.2) AT1G21890 229 / 7e-72 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 222 / 2e-69 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G64700 219 / 3e-68 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 217 / 2e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G53210 214 / 2e-66 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 213 / 7e-66 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 211 / 7e-65 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G177600 [exp] 627 / 0 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177700 [exp] 431 / 6e-151 AT4G30420 353 / 1e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177800 [exp] 347 / 3e-118 AT4G30420 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 241 / 2e-76 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.010G209200 [exp] 239 / 1e-75 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G068300 [exp] 235 / 2e-74 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.016G031400 [exp] 231 / 3e-72 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 227 / 3e-71 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 226 / 4e-71 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023211 [exp] 429 / 1e-150 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019970 [exp] 353 / 7e-121 AT4G30420 351 / 5e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019969 [exp] 335 / 7e-114 AT4G28040 334 / 8e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10008708 [exp] 237 / 7e-75 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 239 / 7e-74 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 233 / 8e-73 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 228 / 2e-71 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 226 / 1e-70 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 224 / 4e-70 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028030 [exp] 224 / 6e-70 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.018G099500.1 pacid=42800583 polypeptide=Potri.018G099500.1.p locus=Potri.018G099500 ID=Potri.018G099500.1.v4.1 annot-version=v4.1 ATGGGTGCATTTGAGGATTCCAAGCCTGCACTGGCTATGTTAGGAATGCAATTCAGCTATGCAATTGTTTCTCTGATCATAAGAGCTGCTCTTATACAAG GAATGAGTCCTAGGGTCTTCGTTGTCTACAGGCAAGCTATAGCAACTGTGGTCATTGCACCTTTAGCTCATTTCTCAAGAAAATCAGGTGGAACTTCTAT GGGATTGAGGAGTTTTTCTTTGGTGTTTTCGGCCTCGCTTATTGGTGTAACAATCAATCAGAATGTCTTTGCTGAGGGACTATACTTGGCCTCATCATCA ATGGCAAGTGCAATGGGTAATCTCGTTCCTGCAATCACATTTGTCATGGCATTCCTTATCGGATTGGAGAAGATTAATATTCGAAGCTTCAGAAGTATCG CGAAAATAGTAGGAACAGTGATATGTGTAAGTGGAGCCATATCAATGGCATTGCTCAGGGGACCAAAGCTGCTTAACACAACCATTTTTGAGTCGGGAGG TGAGGATTGGTTGCTGGGTTGTCTGCTTATTTTTGCGAGCACTTTTTGCTGGTCAATTTGGCTGATTTTGCAGGTTCCGGTTACAGCTAGCTATCCTGAC CACCTGTCCTTGTCAGCCTGGTTGTGTTTCTTGGCAACACTGCAGTCAGGGATTCTGACTTTATTCTTAGAGAAAGACTTGGAGGCTTGGAAACTGCATT CATACTTGGAAGTTGTTGGTTGTTTATTCACAGGAATTATAGGATCTGGGATTTCTTTCTTTGTTCAGGCCTGGGTGATTTCTCAAAGAGGCCCCCTCTT CTCTGCAATGTTCAATCCTCTATGCACTGTTATTGTCACTATACTGGCTGCCATTTTTCTCCACGAAGAGATTTACACTGGAAGCTTGATAGGAGCAGTT GCTGTGATTATTGGTTTATATATTGTGCTATGGGGAAAAGCCAAAGACTTCACAAAGGAGGAAGACAAAGTCGATCCAAAGCTGGAAATTGATGAAAGGC AGACAGTTAAAATCACGATTGAGGAGTCTAGAGGAGTCGAGCCTGTCTTGGAAGAGCCCCTTCTATCTGATAAATCAAATGACATTGAAGAAAGCAGTAA TTTCCATAAAAAATAG
AA sequence Show only first row Show all	>Potri.018G099500.1 pacid=42800583 polypeptide=Potri.018G099500.1.p locus=Potri.018G099500 ID=Potri.018G099500.1.v4.1 annot-version=v4.1 MGAFEDSKPALAMLGMQFSYAIVSLIIRAALIQGMSPRVFVVYRQAIATVVIAPLAHFSRKSGGTSMGLRSFSLVFSASLIGVTINQNVFAEGLYLASSS MASAMGNLVPAITFVMAFLIGLEKINIRSFRSIAKIVGTVICVSGAISMALLRGPKLLNTTIFESGGEDWLLGCLLIFASTFCWSIWLILQVPVTASYPD HLSLSAWLCFLATLQSGILTLFLEKDLEAWKLHSYLEVVGCLFTGIIGSGISFFVQAWVISQRGPLFSAMFNPLCTVIVTILAAIFLHEEIYTGSLIGAV AVIIGLYIVLWGKAKDFTKEEDKVDPKLEIDERQTVKITIEESRGVEPVLEEPLLSDKSNDIEESSNFHKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.018G099500 [exp]	0	1
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177600 [exp]	4.12	0.8788
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.005G223000 [exp]	7.14	0.8183
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.003G133500 [exp]	24.49	0.7477
AT1G19530			unknown protein		Potri.002G034500 [exp]	26.07	0.7879
AT4G15620			Uncharacterised protein family...		Potri.001G323700 [exp]	26.83	0.7932
AT2G41760			unknown protein		Potri.006G051500 [exp]	28.84	0.8018
AT4G31880			unknown protein		Potri.001G046500 [exp]	37.33	0.7347
					Potri.013G028450 [exp]	40.89	0.7616
AT5G03890			unknown protein		Potri.012G022300 [exp]	43.41	0.7677
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.003G066300 [exp]	46.58	0.7838

Compare expression of checked genes

Potri.018G099500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.