Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30420 67 / 2e-13 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G28040 46 / 3e-06 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT2G39510 44 / 2e-05 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 44 / 3e-05 WAT1 Walls Are Thin 1 (.1.2) AT3G30340 42 / 6e-05 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G53210 42 / 8e-05 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 41 / 0.0002 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G37460 40 / 0.0003 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 40 / 0.0005 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G177800 [exp] 150 / 2e-44 AT4G30420 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177700 [exp] 87 / 9e-21 AT4G30420 353 / 1e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 68 / 7e-14 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177600 [exp] 64 / 3e-12 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 48 / 1e-06 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 47 / 2e-06 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 45 / 7e-06 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 45 / 1e-05 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 44 / 2e-05 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023432 [exp] 54 / 8e-09 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 54 / 9e-09 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 54 / 1e-08 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 53 / 2e-08 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023211 [exp] 50 / 2e-07 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019969 [exp] 49 / 3e-07 AT4G28040 334 / 8e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10019970 [exp] 47 / 2e-06 AT4G30420 351 / 5e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10021201 [exp] 41 / 0.0002 AT1G21890 186 / 3e-56 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10027251 [exp] 41 / 0.0003 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 39 / 0.0009 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G099601.1 pacid=42800383 polypeptide=Potri.018G099601.1.p locus=Potri.018G099601 ID=Potri.018G099601.1.v4.1 annot-version=v4.1 ATGTCCATGGCACTGCTCAAAGGACCAGAACTGCTTAACACAGAACTTCTACCAGTAAAATCTTCCAGTACTGGTTCTGGAAGCAAGACTTGGTTGTTGG GTTCAATAACCCTCTTTGGAAACAGTTGTTCAATTGTAATCTGGAAGATCATGCAGCATCATTATTCTTCAAACCTGGTGCATTGCACAAAGGGGACTAC ACTTCTTAGCAATGTTCAAACCTCTGCCACCGTTATTGGGACCGTCTTAGCTGCTACCTTTCTACATGAGGTGATCTACACGTCAAGCTTGTTAGGTGCT ATTGTTGTGATTTCTGGTTTGTATATGGTGATATCGGGTCAAGCTTCAGACCAACAGGAGATCAAACAAGAGACAAATTTTGTGCCACAAGCTGACGGGA GAAATATTCAGCAAGGTTCTATGGATGAATCTTCAGGACATAACATCTGTAAAAAACATTTGGAAGAGCCACTTCTATATGAAAAACTCCCTAATGTAGA CAAAGTGTGA
AA sequence Show only first row Show all	>Potri.018G099601.1 pacid=42800383 polypeptide=Potri.018G099601.1.p locus=Potri.018G099601 ID=Potri.018G099601.1.v4.1 annot-version=v4.1 MSMALLKGPELLNTELLPVKSSSTGSGSKTWLLGSITLFGNSCSIVIWKIMQHHYSSNLVHCTKGTTLLSNVQTSATVIGTVLAATFLHEVIYTSSLLGA IVVISGLYMVISGQASDQQEIKQETNFVPQADGRNIQQGSMDESSGHNICKKHLEEPLLYEKLPNVDKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.018G099601 [exp]	0	1
					Potri.006G157801 [exp]	1.00	0.9774
AT3G21230		4CL5	4-coumarate:CoA ligase 5 (.1)		Potri.005G227800 [exp]	6.70	0.7421
AT1G65352			Putative membrane lipoprotein ...		Potri.005G044333 [exp]	8.12	0.8430
					Potri.002G050150 [exp]	12.40	0.7204
AT5G28780			PIF1 helicase (.1)		Potri.008G203701 [exp]	27.78	0.8516
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Potri.014G114400 [exp]	29.05	0.6799
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024750 [exp]	59.69	0.6034
AT1G71250			GDSL-like Lipase/Acylhydrolase...		Potri.019G067600 [exp]	71.23	0.6913
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Potri.013G015200 [exp]	84.14	0.6605
					Potri.011G106900 [exp]	163.09	0.6220

Compare expression of checked genes

Potri.018G099601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.