Plant FIBer expression Database

Potri.018G100300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G178200
[exp]
51 / 7e-09 AT4G30460 / glycine-rich protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G100300.2 pacid=42800376 polypeptide=Potri.018G100300.2.p locus=Potri.018G100300 ID=Potri.018G100300.2.v4.1 annot-version=v4.1
ATGGCCAATTTGAAGTGCTTGGCAGTTCTTGGTCTCCTCGTTGCATCTTTTGCTGTGAGTGAAAGCCGGGTCGCTAGACAAGACTTGGGCTTGGACCTTG
GAGGCTTAGGGATTGGTTTGGGTGTTGGAGTGGGTATTGGGCTGGGAGGTGGTGGATCAGGTTCTGGTGCTGGAGCAGGTTCGGGTTCGGGTTCCAGACC
TGGGTCTAGCTCAAGTTCCAGTTCATCCTCTTCTTCGTCAAGCTCTAGTTCTGGGTCCGGAGGCGGTTCTGGTGCCGGGTCAGAAGCCGGTTCGTCTGCT
GGTTCTAGGGCCGGGTCAGGAGCTGGTTCGTCTGCTGGTTCTGGTTCTGGGTCAGAAGCCGGTTCGTCTGCTGGTTCTAGGGCCAAGTCCGGGTCAGGAA
ACGGGAATGGTAAATAG
AA sequence
>Potri.018G100300.2 pacid=42800376 polypeptide=Potri.018G100300.2.p locus=Potri.018G100300 ID=Potri.018G100300.2.v4.1 annot-version=v4.1
MANLKCLAVLGLLVASFAVSESRVARQDLGLDLGGLGIGLGVGVGIGLGGGGSGSGAGAGSGSGSRPGSSSSSSSSSSSSSSSSGSGGGSGAGSEAGSSA
GSRAGSGAGSSAGSGSGSEAGSSAGSRAKSGSGNGNGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G100300
[exp]
0 1
Potri.010G230433
[exp]
2.44 0.8990
AT5G61660 glycine-rich protein (.1) Potri.015G111756
[exp]
2.82 0.8960
Potri.018G100232
[exp]
5.91 0.8749
AT5G05960 Bifunctional inhibitor/lipid-t... Potri.008G061800
[exp]
6.92 0.8236
AT4G01700 Chitinase family protein (.1) Potri.014G111800
[exp]
7.07 0.8431 CHI2.1
AT2G37870 Bifunctional inhibitor/lipid-t... Potri.010G100600
[exp]
8.24 0.8211
AT2G18660 AtPNP-A, PNP-A,... plant natriuretic peptide A (.... Potri.018G101600
[exp]
8.77 0.8380
Potri.008G028400
[exp]
8.83 0.8929
AT5G65660 hydroxyproline-rich glycoprote... Potri.002G108100
[exp]
9.00 0.7866
AT1G33440 Major facilitator superfamily ... Potri.019G067500
[exp]
10.95 0.7917

Potri.018G100300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.