Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GAE1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30440 771 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT1G02000 569 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 568 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 563 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT3G23820 522 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G12250 521 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G23920 100 / 3e-23 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT3G14790 100 / 3e-22 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G78570 95 / 1e-20 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G53500 94 / 3e-20 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178500 [exp] 789 / 0 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.014G068400 [exp] 582 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 580 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.017G059100 [exp] 540 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 536 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.012G128200 [exp] 511 / 0 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.003G114600 [exp] 500 / 1e-176 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.002G116750 [exp] 172 / 4e-52 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.011G156100 [exp] 98 / 4e-22 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008893 [exp] 769 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 763 / 0 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10019967 [exp] 684 / 0 AT4G30440 688 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015876 [exp] 571 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 568 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 566 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 563 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10022552 [exp] 508 / 5e-179 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10016640 [exp] 508 / 7e-179 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10032391 [exp] 498 / 2e-175 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.018G100400.1 pacid=42801466 polypeptide=Potri.018G100400.1.p locus=Potri.018G100400 ID=Potri.018G100400.1.v4.1 annot-version=v4.1 ATGCCATCGTTAGAGGAAGAGCTATTCCCTTCAACACCTGGTAAGTTCAAGATCGACCGTGCCCACAACATGAATCGCCAGTTCAACCGTTGCTTCGCTT CAACAAGCACCATGTTCTTATGGGCACTTTTCTTGATTGCTTTAACGGCGTCCTATTTGAGTTTCCAGTCTTTTGTCGATTCCGGTAGCCGATATTTCAC TGCTTCTTGGGGCGGCATTCAATGGGAGAAACAAATCCGAAATTCTGCCCAGATCCACCGTTCTAAGGGCATGTCCGTTCTTGTTACCGGAGCGGCAGGT TTCGTGGGAAGCCACGTTTCTTTAGCCCTCAAGAAACGCGGAGATGGCGTCGTTGGGATTGACAATTTTAACAACTACTACGACCCATCGTTGAAGAAAG CCCGAAAATCTCTCCTCAACAACCAAGGGATTTTTATCGTTGAAGGAGATATAAACGACGCCCGTTTAATAGCTAAGCTCTTTGATATTGTGGCTTTCAC TCACGTTATGCATTTGGCGGCTCAAGCCGGAGTCAGATACGCCATGGAGAATCCACACTCTTATGTCCATTCGAATATAGCAGGCTTGGTTACTCTTCTT GAGGCTTGTAAACTGGCTAATCCTCAGCCGTCTGTCGTTTGGGCTTCTTCAAGTTCTGTGTACGGTTTAAACGAGAAGGTCCCTTTCTCTGAATCTGATC GGACGGACCAGCCCGCCAGTCTTTACGCGGCAACGAAGAAGGCAGGTGAGGAAATTACCCATACATACAATCACATTTACGGTCTTTCAGTTACTGGGTT AAGGTTTTTCACTGTCTACGGTCCGTTTGGAAGACCCGATATGGCTTACTTTTCTTTCACGAGAAACATTTTACAAGGGAAACCGATTACAGTTTACCGG GGCAAGAATCGGGTTGACTTGGCCCGGGATTTCACTTATATCGATGATATTGTGAAGGGTTGTGTAGGGTCATTGGACACTTCAGGTAAAAGCACAGGTT CCGGTGGGAAGAAACGGGGACCCGCTCCTTATCGGATCTTTAATTTGGGTAACACGTCACCAGTCACGGTGCCGACACTTGTGAACATACTGGAGAGGCA TTTGAAGGTAAAAGCGAAGAGGAACATCGTAGATATGCCTGGGAACGGTGACGTACCATTCACTCATGCAAATATTAGTTTGGCCCAGAGAGAACTTGGG TATAAACCGACTACTGATCTGGAAACCGGGTTGAAGAAATTTGTCAAGTGGTATCTCACTTATTACGGCTATAATCGTGGGAAAGCTGTACATTAG
AA sequence Show only first row Show all	>Potri.018G100400.1 pacid=42801466 polypeptide=Potri.018G100400.1.p locus=Potri.018G100400 ID=Potri.018G100400.1.v4.1 annot-version=v4.1 MPSLEEELFPSTPGKFKIDRAHNMNRQFNRCFASTSTMFLWALFLIALTASYLSFQSFVDSGSRYFTASWGGIQWEKQIRNSAQIHRSKGMSVLVTGAAG FVGSHVSLALKKRGDGVVGIDNFNNYYDPSLKKARKSLLNNQGIFIVEGDINDARLIAKLFDIVAFTHVMHLAAQAGVRYAMENPHSYVHSNIAGLVTLL EACKLANPQPSVVWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLSVTGLRFFTVYGPFGRPDMAYFSFTRNILQGKPITVYR GKNRVDLARDFTYIDDIVKGCVGSLDTSGKSTGSGGKKRGPAPYRIFNLGNTSPVTVPTLVNILERHLKVKAKRNIVDMPGNGDVPFTHANISLAQRELG YKPTTDLETGLKKFVKWYLTYYGYNRGKAVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.018G100400 [exp]	0	1	GAE1.1
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.013G005700 [exp]	2.82	0.8397	Pt-XTH3.1
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Potri.010G046900 [exp]	5.38	0.7332
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	6.48	0.8106	ATSEB1.1
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	7.07	0.8011
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098600 [exp]	8.94	0.7893
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G141500 [exp]	9.00	0.7347
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.001G471500 [exp]	12.24	0.6874
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	12.32	0.8026
AT5G11070			unknown protein		Potri.006G259200 [exp]	14.89	0.7953
AT2G27080			Late embryogenesis abundant (L...		Potri.004G197600 [exp]	15.03	0.8136

Compare expression of checked genes

Potri.018G100400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.