Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23890 871 / 0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT5G48960 166 / 4e-44 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT1G75210 157 / 4e-41 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G196700 [exp] 162 / 5e-43 AT1G75210 869 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.010G002900 [exp] 150 / 9e-39 AT5G48960 902 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.008G205900 [exp] 148 / 4e-38 AT5G48960 910 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019962 [exp] 871 / 0 AT2G23890 859 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10015485 [exp] 801 / 0 AT2G23890 790 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10032712 [exp] 164 / 9e-44 AT1G75210 900 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF05761 [poplar] [flax] 5_nucleotid 5' nucleotidase family
Representative CDS sequence Show only first row Show all	>Potri.018G100600.4 pacid=42801306 polypeptide=Potri.018G100600.4.p locus=Potri.018G100600 ID=Potri.018G100600.4.v4.1 annot-version=v4.1 ATGGCTTTCTTTCGAAGGCTTCTCCCTCTCCCCTCCTCCCTTCTAAGGACGAATATTTCTTCCATTACTGGAATTCGAGAAGGTCTGGGAGGAAGCTTTC GGAGCTACAATGCAGTTGCGTTAACTGAACAAATAGTTTTGAAATTGGATGAGGTAGATGGTTTGGTTCTTGATGGTGAAGTAGCAAAAATTCGGGGCGA GTTTGAAGCAGCAAAGCAGGGTTTTTTGAGGATTCCTGAGGCAGTCAAGGGAATGCCAAAAATGAACCCTGAAGGCATATATGTGAATAAGAACCTGAGA TTGGACAATATTCAAGTTTATGGATTTGATTATGACTATACGTTGGCACATTACTCTCCTAACTTGCAACAATTGATATATGATCTTGCAAAAGAGCATA TGGTTAATGAGTTTAGATACCCTGAGATATGCTTGAAATTCAGATATGATCAAACCTTTCCCATTAGAGGCCTATCCTATGACAAGAAAAATGGATGTCT CTTGAAGTTGGATTTCTTTGGGTCAATTGAGCCAGATGGATGCTACTTCGGGCGTCGCAAGCTCAACAGGAAGGAAATAGAACAGATATATGGCACAAGA CATATTGGTCGTGACCAAGCACGTGGGCTTGTTGGCTTGATGGATTTCTTTTGCTTTAGTGAGGCTTGCCTTCTTGCAGATGTTGTACAACATTTTGTTG ATGCTAAACTGGAATTTGATGCAACTTACATATATCAAGATGTAGATCGTGCAATTCAGCATGTTCATCGCAGTGGGTTGGTTCACAGAGGAATTCTTTC TGATCCTTACAGATACCTTGTAAAAAATGGCCAAGTACTTCGCTTTCTTACAATGCTAAGAGAGAAGGGAAAGAAGCTTTTCTTGCTCACTAACTCTCCT TACAATTTTGTGGATGGAGGGATGCGCTTTATGCTGGAGGATTCTTTGGGTTACAGAGACTCTTGGAGGGAGCTTTTTGATGTTGTTATTGCCAAAGCCA ATAAGCCAGAGTTTTACACTTCGGAGCATCCCTTTCGCTATTATGACATGGAGAAGGACACCCTAGCTTTCAATAAGGTGGATGCGTTTCTTCCGAATAA AATTTACTACCACGGATCGCTCAAATCATTTCTTCAAATTACCAAATGGAATGGTCCAGAGGTGATTTATTTTGGTGATCACCTCTTTAGTGACCTAAGG GGGCCTTCAAAGGCTGGTTGGCGCACTGCTGCTATAATCCATGAACTAGAAAATGAAATACGTATTCAGAATGATGATAATTATCGTTTTGAACAGGCAA AATTTCATATCATACAAGAACTGCTTGGTAAACTACATGCAACTGTTGCAAATAGTCAGAGAAGTGAAGTGTGTCAGTTGCTTTCAGAGGAGCTAAATGA TGAGAGGCTAAAGGCAAGGCAGAAGATGAAAAAAATGTTTAACGAGTCTTTTGGAGCAACTTTCCTAACTGACAAAGGTCAAGAATCAGCTTTTGCGTAC TACATCCATCAATATGCAGATGTCTATACAAGCAAGCCTGAGAACTTTTTGCTCTATCCGCCTGAAGCATGGCTTCATGTACCCTTTGATATCAAGATCA TGCCACATCATGTGAAGGTTCCATCAAGCTTATTTAAGAATCAATAG
AA sequence Show only first row Show all	>Potri.018G100600.4 pacid=42801306 polypeptide=Potri.018G100600.4.p locus=Potri.018G100600 ID=Potri.018G100600.4.v4.1 annot-version=v4.1 MAFFRRLLPLPSSLLRTNISSITGIREGLGGSFRSYNAVALTEQIVLKLDEVDGLVLDGEVAKIRGEFEAAKQGFLRIPEAVKGMPKMNPEGIYVNKNLR LDNIQVYGFDYDYTLAHYSPNLQQLIYDLAKEHMVNEFRYPEICLKFRYDQTFPIRGLSYDKKNGCLLKLDFFGSIEPDGCYFGRRKLNRKEIEQIYGTR HIGRDQARGLVGLMDFFCFSEACLLADVVQHFVDAKLEFDATYIYQDVDRAIQHVHRSGLVHRGILSDPYRYLVKNGQVLRFLTMLREKGKKLFLLTNSP YNFVDGGMRFMLEDSLGYRDSWRELFDVVIAKANKPEFYTSEHPFRYYDMEKDTLAFNKVDAFLPNKIYYHGSLKSFLQITKWNGPEVIYFGDHLFSDLR GPSKAGWRTAAIIHELENEIRIQNDDNYRFEQAKFHIIQELLGKLHATVANSQRSEVCQLLSEELNDERLKARQKMKKMFNESFGATFLTDKGQESAFAY YIHQYADVYTSKPENFLLYPPEAWLHVPFDIKIMPHHVKVPSSLFKNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23890			HAD-superfamily hydrolase, sub...		Potri.018G100600 [exp]	0	1
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Potri.009G002100 [exp]	3.46	0.8075
AT5G15400			U-box domain-containing protei...		Potri.017G089600 [exp]	6.48	0.7332
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.011G050400 [exp]	10.09	0.6770
AT4G38380			MATE efflux family protein (.1...		Potri.009G143400 [exp]	11.31	0.7456
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	15.87	0.7628
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Potri.018G103700 [exp]	37.09	0.7300
AT5G41130			Esterase/lipase/thioesterase f...		Potri.001G324400 [exp]	40.29	0.7332
AT1G59970			Matrixin family protein (.1)		Potri.008G027600 [exp]	45.66	0.7137
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Potri.014G130900 [exp]	46.86	0.7185
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	46.95	0.7085

Compare expression of checked genes

Potri.018G100600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.