Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30480 303 / 1e-103 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G58620 82 / 3e-17 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT4G32070 80 / 1e-16 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G65160 78 / 4e-16 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT2G25290 78 / 5e-16 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT1G62390 78 / 5e-16 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G20360 77 / 8e-16 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT3G25230 76 / 2e-15 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT2G42580 75 / 5e-15 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT4G12400 74 / 1e-14 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178900 [exp] 388 / 3e-137 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.011G021000 [exp] 89 / 1e-19 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.004G002900 [exp] 88 / 2e-19 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.006G033400 [exp] 77 / 1e-15 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.018G121100 [exp] 77 / 2e-15 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.015G038600 [exp] 76 / 3e-15 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.012G046900 [exp] 76 / 3e-15 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.018G023500 [exp] 74 / 8e-15 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.002G248300 [exp] 74 / 1e-14 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035117 [exp] 315 / 2e-108 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10039592 [exp] 86 / 9e-19 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029481 [exp] 86 / 2e-18 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10028919 [exp] 80 / 2e-16 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10008035 [exp] 79 / 2e-16 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10025888 [exp] 79 / 3e-16 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10001927 [exp] 77 / 1e-15 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10004336 [exp] 77 / 1e-15 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10001948 [exp] 77 / 2e-15 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10038216 [exp] 76 / 2e-15 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.018G100700.5 pacid=42801000 polypeptide=Potri.018G100700.5.p locus=Potri.018G100700 ID=Potri.018G100700.5.v4.1 annot-version=v4.1 ATGGTGGTGATCGATCCAGAAGAAACCGTACTCGAAAATACCCCGAAACCTCCCCAACCAGCACCATCAACATCAAAAACGACGACGGATTCGACCAGCA GCGAAACCACCACAACGACAACGAAAGCAGCAGCAGTGAAGGGAAGCGATTCCGATGGATTTGAAACGGCAAGCGAAAGCGGAGTCAGCGACAACGAAGA AGAGCAGGTAGAAAATGTCAGTAAAGAAATCAGTAGCAAAAACACCACTGAGGATCAGCCAAAACAAGATACTCAAAACGACGACGAATTGATTCAGAGA GGTATAGAGGAAGCAAATGAAGCAAAGTTGGAAGGGAATAGGTTGTTTGGAAATGGGCAATATGAGGAGGCATTATTACAGTATGATGTGGCTTTACAAG TTTCCCCTCCGGACGTGCCATCATCCATTGAGTTGCGTTCCATTTGCCATTCCAATCGCGGCGTTTGTTTCTTGAAATTGGGGAAATTTGAGGACACGAT CAAGGAATGCTCAAAAGCATTAGAATTAAATCCTTCTTACATGAAAGCTCTTGTTAGAAGAGGAGAGGCTCATGAAAAGCTTGAACATTTCGAGGAGGCT ATTGCTGATATGAAAAAAATCTTGGAATTGGATCCCTCAAATGACCAAGCTAAGAGAACCATTCGCCGCTTGGAGCCACTGGCTGCCGCTAAGCGAGAAA AGATGAATGAAGAGATGATTGGAAAGCTGAAAGATATGGGGAACACTTTGCTGGGCCGCTTTGGCATGAGCGTTGACAACTTCAAAGCTGTTCAAGATCC AAATACTGGCTCCTATTCCATCTCATTCCAACGTTAA
AA sequence Show only first row Show all	>Potri.018G100700.5 pacid=42801000 polypeptide=Potri.018G100700.5.p locus=Potri.018G100700 ID=Potri.018G100700.5.v4.1 annot-version=v4.1 MVVIDPEETVLENTPKPPQPAPSTSKTTTDSTSSETTTTTTKAAAVKGSDSDGFETASESGVSDNEEEQVENVSKEISSKNTTEDQPKQDTQNDDELIQR GIEEANEAKLEGNRLFGNGQYEEALLQYDVALQVSPPDVPSSIELRSICHSNRGVCFLKLGKFEDTIKECSKALELNPSYMKALVRRGEAHEKLEHFEEA IADMKKILELDPSNDQAKRTIRRLEPLAAAKREKMNEEMIGKLKDMGNTLLGRFGMSVDNFKAVQDPNTGSYSISFQR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.018G100700 [exp]	0	1
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.005G051800 [exp]	4.00	0.8385
AT1G79510			Uncharacterized conserved prot...		Potri.008G083400 [exp]	5.47	0.8237
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.005G069000 [exp]	7.34	0.8406
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.006G178900 [exp]	7.48	0.8471
AT4G21610		LOL2	lsd one like 2 (.1)		Potri.004G043100 [exp]	10.63	0.7139
AT1G26800			RING/U-box superfamily protein...		Potri.010G168300 [exp]	11.40	0.8655
AT3G12050			Aha1 domain-containing protein...		Potri.006G194400 [exp]	11.61	0.7728
AT3G51940			unknown protein		Potri.001G021100 [exp]	12.64	0.7277
AT2G33730			P-loop containing nucleoside t...		Potri.015G037200 [exp]	14.28	0.7671
AT2G31470		DOR	DROUGHT TOLERANCE REPRESSOR, F...		Potri.001G458400 [exp]	14.86	0.7884

Compare expression of checked genes

Potri.018G100700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.