Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23940 228 / 4e-77 Protein of unknown function (DUF788) (.1) AT4G30500 212 / 4e-71 Protein of unknown function (DUF788) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179600 [exp] 45 / 1e-06 AT2G23940 43 / 2e-06 Protein of unknown function (DUF788) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041903 [exp] 249 / 1e-85 AT2G23940 295 / 1e-103 Protein of unknown function (DUF788) (.1) Lus10028450 [exp] 245 / 4e-84 AT2G23940 295 / 5e-104 Protein of unknown function (DUF788) (.1) Lus10010382 [exp] 50 / 2e-08 ND 52 / 1e-09
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05620 [poplar] [flax] TMEM208_SND2 SRP-independent targeting protein 2/TMEM208
Representative CDS sequence Show only first row Show all	>Potri.018G101100.2 pacid=42801988 polypeptide=Potri.018G101100.2.p locus=Potri.018G101100 ID=Potri.018G101100.2.v4.1 annot-version=v4.1 ATGGCAAATCAAGGCGCAAAGAAGCGGAAGGAAGAGAACTCCCGTCACATGGCTAACCTCCGTCGCCTCATCATCGCCTGTAACGTTATTTATGTGTTGG TGAGGTTGGTGATTTTCCATTCCAGTTTCACGTGGAAACATTGGATTGGTCTGATTTTGACATCTGTGGCCTATTTTATACCTTATCGACAACTTGCTGC TATGGCCAGCCCTGCTTATGCTGACGACGGTGACCTTCTTGATGGTGGATATGATATGAGCACTGGTGGGATTTGTGGCTATCTACACGATGTTATCTAC ATTACGAGCTTTGTGCAGCTCATGTCCATCATATCTGGAAAGTTTTGGTACACATACTTGGTGATACCAGCATTCGGAGCTTACAAATCTTTTGGATTCT TCAGAGGATTTTTATCAAATGGTTCAGAGGAAGGTGCTGAGGATGAAAAAACCCGCAAGAAGAGGGAAAAGTTGGAGAAGAAAGCTTCACGAGGAAAGTT TGTCAAGACAAGAACTAGATAA
AA sequence Show only first row Show all	>Potri.018G101100.2 pacid=42801988 polypeptide=Potri.018G101100.2.p locus=Potri.018G101100 ID=Potri.018G101100.2.v4.1 annot-version=v4.1 MANQGAKKRKEENSRHMANLRRLIIACNVIYVLVRLVIFHSSFTWKHWIGLILTSVAYFIPYRQLAAMASPAYADDGDLLDGGYDMSTGGICGYLHDVIY ITSFVQLMSIISGKFWYTYLVIPAFGAYKSFGFFRGFLSNGSEEGAEDEKTRKKREKLEKKASRGKFVKTRTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23940			Protein of unknown function (D...		Potri.018G101100 [exp]	0	1
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.003G086700 [exp]	1.73	0.9006
AT2G19790			SNARE-like superfamily protein...		Potri.006G149100 [exp]	1.73	0.9101
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Potri.003G081000 [exp]	5.83	0.8819
AT1G43890		ATRAB-C1, RAB18...	RAB GTPASE HOMOLOG 18-1, ARABI...		Potri.005G063500 [exp]	5.91	0.8952	RAB1.8
AT5G59910		HTB4	Histone superfamily protein (....		Potri.008G030500 [exp]	7.07	0.8961
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.012G095300 [exp]	10.09	0.9056
AT5G11900			Translation initiation factor ...		Potri.018G052900 [exp]	11.53	0.8752
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G080400 [exp]	13.11	0.8976
AT3G13845			unknown protein		Potri.003G037100 [exp]	13.78	0.8580
AT2G20820			unknown protein		Potri.019G109100 [exp]	16.97	0.8888

Compare expression of checked genes

Potri.018G101100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.