Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30510 432 / 2e-152 ATATG18B ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) AT3G62770 131 / 1e-34 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT3G56440 127 / 5e-33 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT2G40810 122 / 5e-31 ATATG18C homolog of yeast autophagy 18C (.1.2) AT5G05150 100 / 3e-23 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132300 [exp] 121 / 2e-30 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.019G062800 [exp] 120 / 2e-30 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.002G207865 [exp] 119 / 8e-30 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.013G018400 [exp] 103 / 1e-24 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 101 / 9e-24 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003694 [exp] 123 / 2e-31 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10041353 [exp] 123 / 2e-31 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10001580 [exp] 123 / 3e-31 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10036577 [exp] 119 / 1e-29 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10004501 [exp] 105 / 9e-25 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10029900 [exp] 103 / 3e-24 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 100 / 6e-23 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10015178 [exp] 99 / 2e-22 AT3G62770 489 / 4e-172 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G101200.4 pacid=42801249 polypeptide=Potri.018G101200.4.p locus=Potri.018G101200 ID=Potri.018G101200.4.v4.1 annot-version=v4.1 ATGAGTAGCGGTAGTCAGTCCTCCTCCTCCTCCTCCTCCTCACAAATCCTCTGCGCTTCTTTTAATCAAGACAACAGTGGCTTTGCGATAAGCACCAGAG ATGGTTTCAAGATCTTCGATTCTAATACGGGACGTCTCTGTTATGAACGAGCTTCTGGAGCTTTTGTTGTTGTGGAAATGCTATATAGTTCAAGCCTCCT CGCCATTGTTGGCGGCGGTGAACAGCCATCTCTATCTCCCCGGCGACTCTGTTTGTTCAATACTACAACAGGAACTGCTCTTCGCGAATTGAATTTCTTA ACTTCAGTCCTCGCCGTCCGATTGAATAAAAAGAGGCTTGTTGTTGTTTTGCAAGAAAAGACTTATATCTATGATTTAAATACGCTGGCAATATTGGATG CCATCGATACAGTTCCTAATGTAAAAGGACTTTGTGCATTCTCTCCTAGTTTGGATGGCTGCTTCTTGGCTCTTCCTTCCAGCACGACCAAAGGATCTGT TTTGGTGTACAATGTCATGGAGCTTCATTCACATTGCGAGATAGATGCTCACCGTTCGCCATTGGCTGCAATTGTCATGTCTTTCAATGGGATGTACATT GCAACAGCATCTGAGCAGGGGACCATAATCAGAGTTCATCTGGTATCAGAAGCAACTAAGTCATATAGTTTTCGAAGGGGGACATACCCATCAACAATAT TTTCCTTGTCATTTGGACCATCAACGCAACTTCCAGAAATTCTTGTAGCCCTGAGTAGTTCAGGTTCCATTCATGTCTTCTCACTGGGTCTTGCCATAAA TCAGAGAGGCAGAAGATCAAGCAGTTTTCTTGGATCATTATTACCTGATTCTGTAAATGATGCATTTGATCCAGCTCATCACCGTGTGCTTCAAAAGGCT GTTCCTGCTGGAGTTAAAAGCAATGTGGTCGTGCGCAAGGTAGACAAGATTGCTGACACAAGTTTATCTGAATCTGTAGCTTCTAGGGCCACGCTATCAG TAATAACCTTTAATGGGCATTTTTTAGAGTACACTGTAGATGTTAACACTCAAAATGAATCTAAATGGCGTTTGGAGAGTGAATTTAATCTCTTGGCAGT GATATCAGGTGAAGAGCAACATTTTCAGCTCGTATGA
AA sequence Show only first row Show all	>Potri.018G101200.4 pacid=42801249 polypeptide=Potri.018G101200.4.p locus=Potri.018G101200 ID=Potri.018G101200.4.v4.1 annot-version=v4.1 MSSGSQSSSSSSSSQILCASFNQDNSGFAISTRDGFKIFDSNTGRLCYERASGAFVVVEMLYSSSLLAIVGGGEQPSLSPRRLCLFNTTTGTALRELNFL TSVLAVRLNKKRLVVVLQEKTYIYDLNTLAILDAIDTVPNVKGLCAFSPSLDGCFLALPSSTTKGSVLVYNVMELHSHCEIDAHRSPLAAIVMSFNGMYI ATASEQGTIIRVHLVSEATKSYSFRRGTYPSTIFSLSFGPSTQLPEILVALSSSGSIHVFSLGLAINQRGRRSSSFLGSLLPDSVNDAFDPAHHRVLQKA VPAGVKSNVVVRKVDKIADTSLSESVASRATLSVITFNGHFLEYTVDVNTQNESKWRLESEFNLLAVISGEEQHFQLV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30510		ATATG18B	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G101200 [exp]	0	1
AT3G53670			unknown protein		Potri.006G082100 [exp]	3.00	0.7487
AT1G08315			ARM repeat superfamily protein...		Potri.001G028300 [exp]	4.00	0.6961
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G068400 [exp]	12.12	0.6541	Pt-CIPK24.1
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.016G082900 [exp]	20.00	0.7204
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Potri.001G160100 [exp]	25.69	0.6363
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	26.26	0.7194
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Potri.009G120200 [exp]	31.08	0.6847
					Potri.008G084200 [exp]	32.51	0.6808
AT5G46550			DNA-binding bromodomain-contai...		Potri.001G355300 [exp]	34.35	0.6895
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Potri.003G150450 [exp]	37.41	0.6734

Compare expression of checked genes

Potri.018G101200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.