Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GER1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17890 549 / 0 GER2 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G73250 534 / 0 GER1, ATFX "GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1", ACTIVATING TRANSCRIPTION FACTOR 5, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (.1) AT5G28840 95 / 7e-22 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT3G14790 63 / 7e-11 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 62 / 1e-10 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G78570 62 / 2e-10 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT5G59290 57 / 3e-09 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 57 / 7e-09 UXS5 UDP-XYL synthase 5 (.1.2) AT3G53520 57 / 8e-09 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28760 54 / 4e-08 UXS6 UDP-XYL synthase 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179100 [exp] 607 / 0 AT1G17890 565 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.013G040600 [exp] 96 / 3e-22 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.005G053000 [exp] 94 / 2e-21 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.006G272700 [exp] 66 / 8e-12 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G214000 [exp] 64 / 4e-11 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.008G053100 [exp] 63 / 6e-11 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.016G080500 [exp] 62 / 2e-10 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.010G207200 [exp] 61 / 3e-10 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.011G103700 [exp] 58 / 4e-09 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037102 [exp] 580 / 0 AT1G17890 565 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10036882 [exp] 572 / 0 AT1G17890 558 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10015915 [exp] 94 / 3e-21 AT5G28840 726 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10020247 [exp] 93 / 6e-21 AT5G28840 719 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10001777 [exp] 93 / 6e-21 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10009174 [exp] 92 / 6e-21 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10010942 [exp] 68 / 3e-12 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10040847 [exp] 64 / 4e-11 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10020776 [exp] 61 / 5e-10 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10042497 [exp] 61 / 6e-10 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF16363 [poplar] [flax] GDP_Man_Dehyd GDP-mannose 4,6 dehydratase
Representative CDS sequence Show only first row Show all	>Potri.018G101700.1 pacid=42801832 polypeptide=Potri.018G101700.1.p locus=Potri.018G101700 ID=Potri.018G101700.1.v4.1 annot-version=v4.1 ATGGGCGGCCCCAGCCACGATTCCTCCGATTTCCTCACCGACAAATCTGCAAAAATCTTCGTGGCGGGACACCGTGGTCTAGTCGGCTCCGCAATCGTCC GCAAGCTCCAATCCCACGGCTTGACCAATCTCGTTCTCCGTTCCCACTCCGAGCTCGACCTCACGCGCCAATCCGATGTGGACTCCTTCTTCGCCGCTGA AAAGCCCCAATATGTTATCCTAGCCGCCGCTAAAGTTGGCGGAATACACGCTAACAATACATATCCTGCCGATTTCATTGCCATAAATCTCCAGATCCAA ACTAATGTAATCGACTCCTCTTTTCGACATGGAGTTAAGAAACTGTTGTTTTTGGGATCCTCTTGTATTTACCCTAAGCTAGCACCGCAGCCGATTCCTG AAAATGCACTGCTTACTGGGCCTTTAGAGCCAACGAATGAGTGGTACGCGATTGCGAAGATATCTGGGATTAAAATGTGTCAGGCTTACAGGATTCAGTA TAATTGGGATGCTATTTCTGGAATGCCCACGAATTTATATGGGCCGAATGATAATTTTCATCCAGAAAATTCTCATGTTTTGCCGGCATTGATGAGGAGG TTTCATGAGGCGAAGGTGAATAAGGCCAAAGAAGTGGTTGTTTGGGGAACTGGGAGTCCGTTGAGGGAGTTTTTGCACGTTGATGATTTGGCGGATGCGG TGGTGTTTTTGATGGACAAGTATAGTGGATTGGAGCATTTAAATGTGGGGAGTGGGAAGGAGGTTACTATAAAGGAGTTGGCGGAGTTGGTGAAGGAGGC TGTTGGCTTTGAAGGGGAGCTTGTTTGGGATACATCAAAGCCCGATGGGACTCCAAGGAAGTTAATGGATAGTTCTAAGTTGTTGGGGTTGGGTTGGATG CCAAAGATTTCGCTGAAGGATGGGCTAGTTGATACTTATAAGTGGTATGTGGAGAATGTGGTAAAGCAATGA
AA sequence Show only first row Show all	>Potri.018G101700.1 pacid=42801832 polypeptide=Potri.018G101700.1.p locus=Potri.018G101700 ID=Potri.018G101700.1.v4.1 annot-version=v4.1 MGGPSHDSSDFLTDKSAKIFVAGHRGLVGSAIVRKLQSHGLTNLVLRSHSELDLTRQSDVDSFFAAEKPQYVILAAAKVGGIHANNTYPADFIAINLQIQ TNVIDSSFRHGVKKLLFLGSSCIYPKLAPQPIPENALLTGPLEPTNEWYAIAKISGIKMCQAYRIQYNWDAISGMPTNLYGPNDNFHPENSHVLPALMRR FHEAKVNKAKEVVVWGTGSPLREFLHVDDLADAVVFLMDKYSGLEHLNVGSGKEVTIKELAELVKEAVGFEGELVWDTSKPDGTPRKLMDSSKLLGLGWM PKISLKDGLVDTYKWYVENVVKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Potri.018G101700 [exp]	0	1	GER1.3
					Potri.019G106950 [exp]	1.00	0.7309
AT3G15040			Protein of unknown function, D...		Potri.016G076300 [exp]	3.87	0.6172
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Potri.006G147500 [exp]	4.00	0.6535	Pt-NMT1.6
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.006G174900 [exp]	13.07	0.5635
AT1G01730			unknown protein		Potri.002G158500 [exp]	15.87	0.5709
AT1G80610			unknown protein		Potri.001G313900 [exp]	29.18	0.5359
AT3G12620			Protein phosphatase 2C family ...		Potri.008G046900 [exp]	55.69	0.4804
AT1G31830			Amino acid permease family pro...		Potri.004G178000 [exp]	64.80	0.4849
AT5G10750			Protein of unknown function (D...		Potri.018G014234 [exp]	78.99	0.4587
AT4G22580			Exostosin family protein (.1)		Potri.001G120800 [exp]	83.87	0.5021

Compare expression of checked genes

Potri.018G101700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.