Plant FIBer expression Database

Potri.018G101800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G179001
[exp]
132 / 4e-40 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G101800.3 pacid=42802075 polypeptide=Potri.018G101800.3.p locus=Potri.018G101800 ID=Potri.018G101800.3.v4.1 annot-version=v4.1
ATGCCGTATAAAAAACACACCACTCACTTCACTTCTTGCCCACATTTAGCTTGGCCTCATTATGTTTTAGGCAAGGCTCTCACTATTGCAGCCAGTAAGT
GGATGTGCTCACAAGCCAAAGCCCCCATGTCCTCAGCTTCTTTGCATCATCGTTTCCATCCCCTCTATCTTCTTAAGATAGGACAAGGGAACCCATCAAG
GGCTTATCTCAGAGGAAATAAGAAATTAGCAGAGAAAACTGGTGGAGTTTTAAGTATCAAACCTTCGCTCATTGGTTTTGCGCTTCATGTAATGATAGGG
TTCTCCTGCCGCTGCTGCTGGAACATGGTGAGAGATGTGGGTGCTGTTACTTGGGGCATTGAGGCATGTGTGGCCTTTGTCATGAGAATATTTGTCAAGC
AAATCGGAGTTTTAGGCTTGAGTGGCGGCAGGTCTGGATACACAAGAAACCACATTTCTTTTATCCAATCATTGCAAAAAGCTCACTTCTTCTTCTTCCT
CTTCTTCTGCTTCCTTGGCTTCTGGTAA
AA sequence
>Potri.018G101800.3 pacid=42802075 polypeptide=Potri.018G101800.3.p locus=Potri.018G101800 ID=Potri.018G101800.3.v4.1 annot-version=v4.1
MPYKKHTTHFTSCPHLAWPHYVLGKALTIAASKWMCSQAKAPMSSASLHHRFHPLYLLKIGQGNPSRAYLRGNKKLAEKTGGVLSIKPSLIGFALHVMIG
FSCRCCWNMVRDVGAVTWGIEACVAFVMRIFVKQIGVLGLSGGRSGYTRNHISFIQSLQKAHFFFFLFFCFLGFW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G101800
[exp]
0 1
AT3G58690 Protein kinase superfamily pro... Potri.014G143100
[exp]
2.00 0.9055
AT3G62110 Pectin lyase-like superfamily ... Potri.002G186900
[exp]
2.82 0.8691
AT5G48450 SKS3 SKU5 similar 3 (.1) Potri.014G177700
[exp]
4.89 0.8476
AT1G53380 Plant protein of unknown funct... Potri.001G387700
[exp]
5.74 0.8557
AT3G17090 Protein phosphatase 2C family ... Potri.008G104300
[exp]
6.16 0.8121
AT5G02560 HTA12 histone H2A 12 (.1.2) Potri.006G082300
[exp]
7.48 0.8207
AT3G14310 ATPME3 pectin methylesterase 3 (.1) Potri.001G162400
[exp]
10.48 0.8228
AT4G27450 Aluminium induced protein with... Potri.001G403000
[exp]
11.18 0.8030
AT2G34190 Xanthine/uracil permease famil... Potri.004G058800
[exp]
11.22 0.8304
AT2G41990 unknown protein Potri.009G140600
[exp]
11.48 0.8221

Potri.018G101800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.