Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23970 308 / 2e-106 Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30550 305 / 2e-105 GGP3 gamma-glutamyl peptidase 3, Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30530 281 / 4e-96 GGP1 gamma-glutamyl peptidase 1, Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30540 276 / 5e-94 Class I glutamine amidotransferase-like superfamily protein (.1) AT2G23960 266 / 4e-90 Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078200 [exp] 270 / 1e-91 AT2G23970 211 / 1e-68 Class I glutamine amidotransferase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019964 [exp] 375 / 8e-133 AT2G23970 279 / 6e-95 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10014635 [exp] 253 / 1e-84 AT2G23970 233 / 8e-77 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10033793 [exp] 248 / 9e-83 AT2G23970 239 / 4e-79 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10015493 [exp] 159 / 2e-49 AT4G30550 96 / 8e-25 gamma-glutamyl peptidase 3, Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [poplar] [flax] Glutaminase_I PF00117 [poplar] [flax] GATase Glutamine amidotransferase class-I
Representative CDS sequence Show only first row Show all	>Potri.018G102000.1 pacid=42801376 polypeptide=Potri.018G102000.1.p locus=Potri.018G102000 ID=Potri.018G102000.1.v4.1 annot-version=v4.1 ATGAAGGTTACATCCGAGAAAAGATATGCTCTTTTGCAAGCAGCAAGGGACTCTGACTATGTAAAGAAAGTTTACGGAGGGTACTTTAATGTGTTTGTTG CAGCTTTTGCTGAAGAGGGAGAAACATGGGACTTGTTTAGAGTTGTTGAGGGGGAGTTTCCTGACATGAATGAGCTTCACAAATACGATGGCTTTGTAGT TACTGGCAGCCCTTATGATGCCTACGGAAATGACTATTGGGTTCTCAAGCTTTGCTTCATCTTGCAAACTCTAGATGCCATGGAGAAGAAAGTCCTTGGA ATTTGCTTTGGTCATCAGGTTTTGTGCAGAGCGCTGGGTGGAAAGGTTGGAAAAGCATATTCTGGGTGGGATATTGGGTTAAGGAGAGTGAGCATAGTGA AGGATCTGTCACCATGCAGCTTCCCAGGAGACTTAACAGAAATCCCTCCCTCGCTATCAATAATCGAGTGCCATCAAGATGAGGTGTGGGAGGTGCCATT AGGAGCTGAAGTGATTGCATTCTCAGACAAAACTGGTGTGGAGATGTTCACCATTGGAGATCACATCTTGGGCATTCAAGGCCATCCCGAGTACACCAAG GATATTCTTTATAATCTCATTGATCGCCTTCTGAGTAACAACTGCATAGAGAGTGCTTTTGCCGAAAAGGCCAAGTTTGGATTGGAGATAGCTGAACCAG ACAGAAAATGCTGGGAAAAGATCTGCAAGAACTTTCTAAAGGGTAGATAA
AA sequence Show only first row Show all	>Potri.018G102000.1 pacid=42801376 polypeptide=Potri.018G102000.1.p locus=Potri.018G102000 ID=Potri.018G102000.1.v4.1 annot-version=v4.1 MKVTSEKRYALLQAARDSDYVKKVYGGYFNVFVAAFAEEGETWDLFRVVEGEFPDMNELHKYDGFVVTGSPYDAYGNDYWVLKLCFILQTLDAMEKKVLG ICFGHQVLCRALGGKVGKAYSGWDIGLRRVSIVKDLSPCSFPGDLTEIPPSLSIIECHQDEVWEVPLGAEVIAFSDKTGVEMFTIGDHILGIQGHPEYTK DILYNLIDRLLSNNCIESAFAEKAKFGLEIAEPDRKCWEKICKNFLKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23970			Class I glutamine amidotransfe...		Potri.018G102000 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Potri.014G159700 [exp]	17.32	0.8415
AT5G41810			unknown protein		Potri.001G093500 [exp]	18.70	0.8646
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Potri.014G159900 [exp]	21.72	0.8903
AT1G43040			SAUR-like auxin-responsive pro...		Potri.002G000600 [exp]	28.82	0.8894
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147600 [exp]	32.31	0.8217
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046700 [exp]	32.68	0.8888
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.005G095250 [exp]	37.08	0.8852
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.010G077000 [exp]	38.18	0.8804
AT1G11050			Protein kinase superfamily pro...		Potri.005G181800 [exp]	45.36	0.8793
					Potri.003G071050 [exp]	48.41	0.8777

Compare expression of checked genes

Potri.018G102000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.