Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30860 587 / 0 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT2G44150 204 / 5e-61 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT3G59960 187 / 1e-54 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT1G77300 135 / 2e-33 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT1G76710 132 / 2e-33 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT5G42400 109 / 9e-25 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT2G23740 99 / 2e-21 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT1G05830 94 / 5e-20 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 92 / 2e-19 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT4G27910 91 / 5e-19 SDG16, ATX4 SET domain protein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G147200 [exp] 218 / 3e-66 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.017G000400 [exp] 218 / 6e-66 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.005G195400 [exp] 140 / 5e-36 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.005G182100 [exp] 135 / 4e-33 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 133 / 1e-32 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G260100 [exp] 108 / 2e-24 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.007G033000 [exp] 107 / 4e-24 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.002G001000 [exp] 102 / 9e-23 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G129800 [exp] 101 / 2e-22 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006888 [exp] 407 / 4e-138 AT4G30860 362 / 5e-121 ASH1-related 3, SET domain group 4 (.1) Lus10003777 [exp] 322 / 3e-103 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10039118 [exp] 219 / 2e-66 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10038740 [exp] 203 / 2e-59 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10016600 [exp] 142 / 6e-37 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10000967 [exp] 132 / 2e-32 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10028662 [exp] 132 / 2e-32 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10025172 [exp] 105 / 3e-23 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 102 / 1e-22 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10022483 [exp] 100 / 6e-22 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.018G102100.1 pacid=42801694 polypeptide=Potri.018G102100.1.p locus=Potri.018G102100 ID=Potri.018G102100.1.v4.1 annot-version=v4.1 ATGCCAGATCTAGGACTAGGAGGTAACCTCTCTCTCTCCTCTTCTCTTACTCTCACGCGCTGCCCTGCTCTCAAACCCAACTCTCCTCTCCCTCCTCCTC CCGATGCCATTGATCAATCAGATTCAATTACCTCAACGACGGCGACAATAACTTCTGTTACAGTCAAAACCCTGGTTAAATGGGACCAAAGTGTTCCAGA AGGAGCGGCAGATTTGTGCAATGGGAGTTCAATTAGGGTTTTGAAGCGGACCAGTGCTAGCCGATTGGGTTGCAAGAAGGGGTTTAATAATAATATTAGT AGTAATAATGGTAAATGCTTGGATGATTACGTTAGGGTTTGGGTTCAGAAGAAGATGGATGCGGGTGTCTCACAATCTCGCTGCCTTCTTCCTTTTCTTG TTGGTGCAAAGAAAATGGTGGAATGTCTCTTTTGCTGTAGATCTATCTACCCCGGGGAGGGAATGCAATGCTCTGTTCGTAACTGTCAGGGAGTTTATCA CTTGACATGTGTTGTGGAAGGGCTTGGAGTCTCAAATCTGAGAAAATTCAAGTGCCCTCAGCATGAATGTTTCACTTGCAAAGGGAAATTTCATTGGCGG TGTGTTCGATGCACAGTAGCTTCACATAATCAGTGTGCACCATGGTCTGATGAAGTAGTTTATCTGAAAAACCAACCAGGACGAGCAGTTTGTTGGCGGC ATCCAACTAATTGGCGGCTAGATAAGAAGCATGTGGTTCCAGCAACTGATATCGAGGAAATATTTTGTCGTTTGCCTCTACCTTACATTGATGAGGAGTT CAAGATTGATTTAACATGGAAAGACCTGACAGAGAATAAACTAGAACCACCTCCATATGTGCACATCAGGCGCAATGTTTACCTGGTCAAGAAGAAGCGT GATGATTCTGATGGTGATGTTGGATGCACAAATTGCAGCTCTACATGCTGTGAGAATTGTGTGTGCAGGGTTCAATGTATAAGCTGCTCCAAGGCATGCC GCTGCCCTGAAACTTGCACCAATAGGCCATTTCGCAAGGAGAAAAAGATAAAAATTGTCAAGACTGAATTTTGTGGTTGGGGAGTGGAGGCAGCTGAACC ACTAAATAAAGGCGATTTTATAATTGAGTATATTGGAGAAGTCATTGACGATAAATTATGTGAACAAAGGCTCTGGGACATGAAATACAAAGGTGTGCAG AACTTCTACATGTGCGAAATTCGAAAGGACTTCACAATTGATGCAACTTTTAAGGGAAATTCATCTCGTTTTTTAAATCATAGTTGCAAACCCAACTGTA TCCTAGAAAAGTGGGATGTCGAGGGGGAGACTCGGGTGGGAGTGTTTGCTGCTGGCTCAATAAGAGTTGGAGAACCATTAACATATGACTACAGGTTTGT TCGATTTGGACCTGAGGTAAAGTGCTATTGTGGGGCTCCAAATTGTCAGGGATATCTTGGAACCAAAAGAAAGATTGCTAAGTTGAACATTGGCTGGGGT GCAAAACGAAAGAGAACATCAACTGCATGTGTAGCCATTATAACCATGTGA
AA sequence Show only first row Show all	>Potri.018G102100.1 pacid=42801694 polypeptide=Potri.018G102100.1.p locus=Potri.018G102100 ID=Potri.018G102100.1.v4.1 annot-version=v4.1 MPDLGLGGNLSLSSSLTLTRCPALKPNSPLPPPPDAIDQSDSITSTTATITSVTVKTLVKWDQSVPEGAADLCNGSSIRVLKRTSASRLGCKKGFNNNIS SNNGKCLDDYVRVWVQKKMDAGVSQSRCLLPFLVGAKKMVECLFCCRSIYPGEGMQCSVRNCQGVYHLTCVVEGLGVSNLRKFKCPQHECFTCKGKFHWR CVRCTVASHNQCAPWSDEVVYLKNQPGRAVCWRHPTNWRLDKKHVVPATDIEEIFCRLPLPYIDEEFKIDLTWKDLTENKLEPPPYVHIRRNVYLVKKKR DDSDGDVGCTNCSSTCCENCVCRVQCISCSKACRCPETCTNRPFRKEKKIKIVKTEFCGWGVEAAEPLNKGDFIIEYIGEVIDDKLCEQRLWDMKYKGVQ NFYMCEIRKDFTIDATFKGNSSRFLNHSCKPNCILEKWDVEGETRVGVFAAGSIRVGEPLTYDYRFVRFGPEVKCYCGAPNCQGYLGTKRKIAKLNIGWG AKRKRTSTACVAIITM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103100 [exp]	1.00	0.9328
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Potri.004G141500 [exp]	1.41	0.9248
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	3.46	0.8939
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	3.87	0.9044	CYCA3.1
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Potri.001G358100 [exp]	5.00	0.8888	Pt-ATBRCA1.1
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Potri.019G083200 [exp]	8.00	0.8372
AT2G40550		ETG1	E2F target gene 1 (.1)		Potri.019G056200 [exp]	8.94	0.8601
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	9.16	0.8816
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.002G044800 [exp]	9.38	0.8309
AT2G22600			RNA-binding KH domain-containi...		Potri.007G012000 [exp]	9.74	0.8356

Compare expression of checked genes

Potri.018G102100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.