Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30850 374 / 5e-129 HHP2 heptahelical transmembrane protein2 (.1.2) AT2G24150 352 / 2e-120 HHP3 heptahelical protein 3 (.1) AT4G37680 234 / 5e-74 HHP4 heptahelical protein 4 (.1.2) AT4G38320 226 / 5e-71 HHP5 heptahelical protein 5 (.1) AT5G20270 219 / 9e-69 HHP1 heptahelical transmembrane protein1 (.1) AT2G40710 94 / 2e-23 Haemolysin-III related integral membrane protein (.1) AT4G38290 80 / 3e-18 Haemolysin-III related integral membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064400 [exp] 282 / 5e-93 AT5G20270 369 / 2e-127 heptahelical transmembrane protein1 (.1) Potri.T124407 [exp] 280 / 6e-92 AT5G20270 385 / 2e-133 heptahelical transmembrane protein1 (.1) Potri.018G124754 [exp] 279 / 2e-91 AT5G20270 384 / 4e-133 heptahelical transmembrane protein1 (.1) Potri.007G005800 [exp] 241 / 4e-76 AT4G37680 611 / 0.0 heptahelical protein 4 (.1.2) Potri.014G006000 [exp] 236 / 1e-74 AT4G37680 632 / 0.0 heptahelical protein 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008057 [exp] 270 / 6e-88 AT5G20270 394 / 6e-137 heptahelical transmembrane protein1 (.1) Lus10036605 [exp] 268 / 4e-87 AT4G30850 259 / 3e-84 heptahelical transmembrane protein2 (.1.2) Lus10038120 [exp] 247 / 2e-79 AT5G20270 377 / 3e-131 heptahelical transmembrane protein1 (.1) Lus10010605 [exp] 227 / 4e-71 AT4G37680 464 / 7e-164 heptahelical protein 4 (.1.2) Lus10011713 [exp] 221 / 2e-68 AT4G37680 585 / 0.0 heptahelical protein 4 (.1.2) Lus10025206 [exp] 218 / 2e-67 AT4G37680 584 / 0.0 heptahelical protein 4 (.1.2) Lus10035823 [exp] 129 / 2e-32 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Lus10007709 [exp] 0 / 1 ND 47 / 2e-10
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF03006 [poplar] [flax] HlyIII Haemolysin-III related
Representative CDS sequence Show only first row Show all	>Potri.018G102400.1 pacid=42801532 polypeptide=Potri.018G102400.1.p locus=Potri.018G102400 ID=Potri.018G102400.1.v4.1 annot-version=v4.1 ATGAGGAAAAACGCGAAGAAGGTGAACCAGCAAGTGAAGATGGATCACTCAATGGATGAGAAAACAGAGAAAGTGAAAAATTCAAAGCAGAGAATGAAGA AGAGGTCGAGATTATTGACATACAAAGAGTTGCCAGATTATTTGCAAGATAATGAGTATATATTGGATTACTATCGATGCGAATGGCCTTTAAAGGATGC ATTTTTTAGCGTATTTTCTTGGCACAACGAAACTCTCAATGTCTGGACCCATTTAGGGGGTTTCTTAATATTTCTGGGATTGCTGGTTTTGAGTTTCATG GAGGAGAGCACGGAGAATATTGAAGGTTTAATCACCAGTTTCTCCAGAGCAAAAGTTTCTGGACCGCTGATGACACTGATGATGATGAAGAAGAATCAAG ACTTGAACGTCTCAGATAATCATATCTTTCCTGATTCGGTCTTAATGAGGCACATTTCACAGCAATCAGTCTTCCATAAGCAGGATGGTTCTGATAAGGT TATTCCTAGATGGCCATGGTTTGTTTTCCTATCTGGGGCGATGATGTGCTTGGTCTGCAGCTCCCTCTCCCACCTCCTTGCTTGCCATTCCAAACGCTTC AATTTGTTCTTCTGGCGCCTAGATTATGCTGGCATCTCCCTTATGATAGTTTGTTCATTCTTTGCTCCCATCTATTATGCCTTCTATTGCAACCCCTATC CACGGTTCTTTTATCTAACCTCCATAACTGTGCTTGGTGTACTTGCAATCATCACCCTCCTTGCGCCTGTTTTTTCCACTCCTCGTTTCAGACCTTTCAG GGCCACCCTCTTCCTCATCATGGGTTTTTCAGGGGTGATTCCTGCAGCACACGCAGTTGTCCTCCACTGGGGGCATCCACATATATTTGTATCCCTCGGA TATGAGCTTGTTATGGCAATTTTCTACACTGCAGGAGTTGGTTTTTACATCACTAGAATACCAGAACGTTTGAAGCCTGGTGCATTTGACATTGCTGGGC ACAGCCATCAGATTTTTCACGTGTTTGTTGTTCTAGCAGCACTTTCTCACTGTGCTGCCACACTAGTTATGATGGATTTTCGCCGGAGATCTCCAGCGTG TGCATGTTAA
AA sequence Show only first row Show all	>Potri.018G102400.1 pacid=42801532 polypeptide=Potri.018G102400.1.p locus=Potri.018G102400 ID=Potri.018G102400.1.v4.1 annot-version=v4.1 MRKNAKKVNQQVKMDHSMDEKTEKVKNSKQRMKKRSRLLTYKELPDYLQDNEYILDYYRCEWPLKDAFFSVFSWHNETLNVWTHLGGFLIFLGLLVLSFM EESTENIEGLITSFSRAKVSGPLMTLMMMKKNQDLNVSDNHIFPDSVLMRHISQQSVFHKQDGSDKVIPRWPWFVFLSGAMMCLVCSSLSHLLACHSKRF NLFFWRLDYAGISLMIVCSFFAPIYYAFYCNPYPRFFYLTSITVLGVLAIITLLAPVFSTPRFRPFRATLFLIMGFSGVIPAAHAVVLHWGHPHIFVSLG YELVMAIFYTAGVGFYITRIPERLKPGAFDIAGHSHQIFHVFVVLAALSHCAATLVMMDFRRRSPACAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30850		HHP2	heptahelical transmembrane pr...		Potri.018G102400 [exp]	0	1
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	4.24	0.8526
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	4.24	0.8507
AT5G41685			Mitochondrial outer membrane t...		Potri.018G145502 [exp]	4.47	0.7950
AT3G48610		NPC6	non-specific phospholipase C6 ...		Potri.015G097900 [exp]	5.83	0.7756
AT5G45470			Protein of unknown function (D...		Potri.015G107400 [exp]	10.67	0.7722
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	10.95	0.8149
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	13.41	0.8172
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.003G038800 [exp]	15.87	0.8081	Pt-ATMSI4.2,NFC907
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Potri.004G175600 [exp]	16.52	0.7894
AT1G18340			basal transcription factor com...		Potri.005G176600 [exp]	21.90	0.7765

Compare expression of checked genes

Potri.018G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.