Potri.018G102500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28080 2144 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT1G01320 1348 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
AT1G15290 1245 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT3G52140 326 / 1e-90 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G180100 3120 / 0 AT4G28080 2109 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.003G031000 1406 / 0 AT1G15290 1522 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.014G098600 1361 / 0 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.002G170900 1347 / 0 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.009G065300 328 / 2e-91 AT3G52140 1758 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Potri.001G271200 327 / 6e-91 AT3G52140 1842 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035822 2308 / 0 AT4G28080 2117 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10036604 1535 / 0 AT4G28080 1357 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10004009 1367 / 0 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10030259 1290 / 0 AT1G01320 1731 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10037481 327 / 5e-91 AT3G52140 1894 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Lus10015708 324 / 6e-90 AT3G52140 1874 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
PFAM info
Representative CDS sequence
>Potri.018G102500.1 pacid=42801004 polypeptide=Potri.018G102500.1.p locus=Potri.018G102500 ID=Potri.018G102500.1.v4.1 annot-version=v4.1
ATGGCTCCCAGAACTGGAAAGGCCAAGCCTCATAAAGCAAAAGGAGAGAAGAAGAAGAAGGAAGAAAAAGTGTTGCCTACAGTCATTGAAGCCACCGTTG
AAACGCCAGACGACTCTCAAGTGACTCTCAAGGGCATCTCTACGGACAGGATCTTAGATGTAAGAAAGCTTCTTGGGGTGCATGTCGAGACGTGCCATTT
GACCAATTTCTCCTTATCTCACGAGGTACGGGGACCCAGACTCAAGGATTCGGTGGACATCATCTCTCTCAAACCCTGCCACCTCACCATTATCGAAGAG
GACTACACAGAAGATCTTTCCATAGCTCACATTCGCCGTCTCCTCGACATCGTCGCCTGCACCACCTCATTTGGGGCCTCCTCCACTTCTCCGACCAAAC
CAGCGGGTCGAATCGGAAATTCAAAGGAGTCCGGTTCAAAAGAGATCTCTTCCACCGAGACAAGAGGAGATAACAAGAAAAGCGTGAGCAAGAGCGGGAA
TGATGATTGTACGGACGCGATGGAGAAAGCCGATGCGGAGGTTTCCATGTGTCCGCCACCGCGGCTTGGCCAGTTTTATGACTTCTTTTCTTTCTCGCAC
CTCACGCCGCCGGTTCAATATATCAGGAGATCAAATCGGTCTTTCGTTGAAGATAAAACGGAAGATGATTACTTCCAGATAGACGTTAGGGTTTGCAGTG
GGAAGCCAATGAAAATTGTGGCTTCGCGAAAAGGATTTTATCCAGCTGGAAAACGCCTTCTTCTTTGCCACTCTTTGGTTAGTTTGTTGCAGCAGATTAG
CAGAGTTTTTGATGCTGCATACAAAGCTCTTATGAAAGCTTTCACTGAGCATAATAAATTTGGTAATCTTCCTTATGGATTTCGAGAGAACACGTGGGTT
GTTCCACCGGTTGTTGCTGATAATCCGTCTGGTTTTCCACCACTTCCTGTGGAGGATGAGAATTGGGGAGGTAATGGAGGAGGACATGGAAAAGATGGGA
AACATGATTACAGGCCATGGGCGAAGCAGTTTGCGATTCTGGCAGCAATGCCTTGTAAAACATCAGAAGAGAGGCAAATCCGGGACAGGAAAGCCTTTCT
ACTTCATAGTTTATTTGTCGACATTTCTGTTTTCAAAGCTGTTGCAGCAATCAAGCATATCGTTGAAAGTAATCAGTGCTTTTTAAGTGATCTTGGGAAG
TCGGTTTTGCACGAGGAAAGAGTTGGAGATTTAATTATTATTGTTATGAGAGATGCGTCTGATGCTAGCACCAAGTTGGATTGTAAAAATGATGGGTGTC
TGGTTCTTGGAGTGTCACAGGAAGAGCTTGCTCAGAGAAATTTACTTAAGGGCATAACTGCCGATGAAAGTGCAACTGTTCATGATACTCCCACTTTAGG
TGTTGTGGTTGTTCAACATTGTGGCTTCACAGCTGTTGTTAAAGTTTCTTCTGAGGTGAACTGGGAGGGGAATCGTATTCCCCAGGACATTTCCATAGAG
GATCAGACAGAAGGAGGCGCCAATGCCTTAAATGTTAATAGCTTGAGAATGCTATTGCATAATTCATCTACGCCTCAATCATCTAGTACCCCCCAACGAC
TACAGGGTGGAGATCATGAAAGTTTACGCTCTGCCAGGTCTTTGGTGCGGAAAATACTAGAGGATAGTTTGTTGAAGCTGCAGGAAGAATCCAGTAGATG
CACGAAGTCTATCAGATGGGAGCTAGGAGCATGTTGGATTCAACACTTGCAAAATCAGGCTTCAGGGAAAGCTGAGGCTAAGAAAACTGAAGAAACTAAG
CCTGAGCCTGCTGTCAAGGGGCTTGGAAAGCAAGGTGCATTACTACGGGAAATAAAGAAGAAAACAGATGTCAGAACCAGCAAAACTGAAGAGGGAAAAG
ATGTTTCTTCTGGTACCAACCTTGACACGAGCAAGAAATCTGATAGCACTAATCAGAAAGAATCGGAGAAAATGGATGAGAAAATGGAAGTCATGTGGAA
AAAGCTGCTTCCCGAAGCAGCATATCTGCGACTTAAAGAATCAGAAACCGGTCTTCATCTGAAGACACCTGATGAGTTGATTGAAATGGCACATAAATAC
TATGCTGACATTGCTCTTCCAAAACTGGTGGCAGATTTTGGCTCCCTAGAACTTTCCCCAGTTGATGGAAGAACATTGACAGATTTTATGCATACTCGGG
GTTTGCAGATGTGCTCTCTGGGGCGTGTGGTTGAACTTGCAGACAAGCTCCCTCATGTCCAATCACTCTGTATACATGAAATGATTGTCCGAGCCTTCAA
ACACATATTACAAGCTGTTGTTGCATCAGTTAACAATGTTGCTGACTTGGCTGCTTGCATTGCATCATGTCTAAATATATTGTTAGGAACGCCTTCAACT
GAAAATGAAGACTCGGATATTATAAATGATGAGAAACTAAAGTGGAAGTGGGTGGAAACCTTCCTTGCAAAGAGGTTTGGGTGGCGGTGGAAGCATGAGA
ACTGCCAGGATCTAAGAAAGTTTGCCATTCTTCGTGGGCTGTCCCACAAGGTTGGCCTTGAGCTTCTTCCTAGGGACTATGATATGGACAATGCATCTCC
TTTCAAGAAGTCTGATATTATAAGCATGGTCCCTGTATACAAGCATGTTGCATGTTCATCTGCGGATGGACGTACACTGCTAGAATCATCCAAAACTTCC
TTAGATAAGGGTAAATTGGAGGATGCTGTTAACTATGGAACTAAGGCACTGTTGAAACTCGTGTCAGTCTGTGGCCCTTTCCATCGAATGACTGCAGGAG
CATATAGTCTTTTGGCTGTAGTGCTCTACCATACTGGGGATTTTAATCAGGCTACCATTTATCAACAAAAAGCGTTGGATATTAATGAGAGGGAGCTCGG
ACTTGATCATCCTGATACAATGAAAAGTTATGGGGATCTAGCTGTCTTCTACTACCGTCTTCAACACACAGAATTAGCCTTGAAGTATGTCAATCGTGCG
CTGTATCTTTTGCATCTAACATGCGGGCCATCTCATCCAAATACTGCTGCCACATATATCAATGTTGCAATGATGGAAGAAGGATTAGGGAACGTGCATG
TTGCTCTTAGATATCTTCATGAGGCTCTCAAGTGTAACCAGAGACTCCTTGGAGCGGATCATATACAGACTGCTGCCAGCTACCATGCCATAGCAATCGC
TCTATCATTGATGGAAGCTTACTCCTTAAGTGTTCAGCATGAGCAGACCACACTGCAAATACTGCAGGCCAAACTTGGATCTGAGGATCTACGGACACAG
GATGCAGCTGCGTGGCTTGAATATTTTGAGTCAAAGGCTCTGGAACAGCAAGAAGCTGCACGCAACGGTACTCCAAAGCCAGATGCCTCAATTTCCAGTA
AAGGTCATTTAAGTGTATCAGACCTTTTGGATTATATAACACCGGATGCAGATATGAAAGCAAGAGAAGCTCAGAAGAAAGCTCGTGCAAAGGTTAAAGG
CAAACCAGGCCAGAATGAGGACACAGTCTCAGATGAATACCAAAAGGATGAAATTTTGTCACCCACTTATCCTGTTGCAGAGAACTCAAGTGATAAAGAA
AACAAATCTGAAACACAATTCGTAGAGCCTAGGAATGATAAATCTGATTTAGGTCTTCCAGATGAATCATTATTGAAGAATGATGATATGACACTAGAGG
ACAACTCAGAAGAGGGATGGCAAGAAGCTGTTCCTAAAGGCCGTTCACCTACAAGTCGCAAATCTTCTGGTTCAAGGAGGCCAAGCCTAGCAAAATTAAA
TACTAACTTTATGAATGTACCTCAGTCATCAAGATTCCGAGGAAAACCTAGCAATTTTGCATCCCCTAAAACATCGCCAAATGATCCTGCTGCTTCCAAT
GCAATGACAGTTCCAGTTCGTAAAAAGTTTGTTAAGAGTGCCAGCTTCGGTCCAAAAGTAAATAACTCTGGCGCCTCAACTGGTGGAGCAGAGAAATCAA
GTAATGCTAAATCAGCCCCAGCTACCCCTGCCTCAACTGAGCAAGCTGCCAAAGCAGCTCCAATGGCAAGTCCAATCAGTGTTCAGGCAGCTGGAAAAAT
GTTTTCCTATAAAGAAGTTGCTTTGGCTCCTCCTGGGACAATTGTGAAGGCAGTAGCAGAACAGTTGCCAAAAGGAAACCCTACAAAGGAACCAAGTCCT
CAGGGAAGCCATGAGACAGCTGCAACTGATGTCAAATCAGAAGGGGTGACAGCATTAAAAGCTGTGGAGGTAGGAAAACTTCAGAAACCTGAAGGAGAGA
GACAGCTTCCAGCTTCAGAGGGAATGAAAAGTCCTGTTGATCAAGAGAGAGAAACAGGAGGGGTTCTGGTGGCGACAGAGAAACTTGAAGAAATAAAATT
TGCTGATGAGGATCACATAGATACAGAAGATGGAGGTGCTGAAATTAAAGTAGTTACTGTTAAAGATACTACCGCAGAAGCTGAAACTATTTCAGACTTG
GGTCATGAGAATTTGGATACTTCCAAGGATTCAAATACCATGTCTTCCCCAACTGAAGTGCCTGATACAAGAGCATCAGATGGTTTCCCTTCAGCTTGCC
CTGATCTGAAACCTCAATCTACTTCAATTGAAAAGGCTGGTTTGTTGGAAAAAGATTCTTCCAGCACAAATGAAAAGGTAGAAGATGAGAATACTCCAGA
TCTTTCTAATGACAATACAAATGCTAAGCTATTGTCAACTGGAGGAGTAAAGCAAGATGATGCGGAAACTGGTAAGGAGGCGACCAAGAAACTTTCTGCA
GCTGCACCACCATTTAATCCATCCACAATTCCAGTTTTCAGCTCAGTTACTGTCCCAGGATTCAAAGATCACGGACTTCTTCCTCCACCTGTGAACATTC
CTCCAATGCTTACTGTCAATCCTGTTCGTAGATCACCTCATCAATCAGCTACAGCTCGGGTTCCATATGGTCCGAGGTTGTCTGGTGGCTATAACAAATC
TGGAAATCGGGTTCCACGTAACAAGCCGAGCTTCCACAACGGTGAGCATACAGGGGATGGGAATCATTTCAGCCCTCCTAGAATCATGAACCCACATGCA
GCTGAATTTGTGCCTTGCCAACCTTGGGTTCCCAATGGCTATCCATTGCAACACAATGGCTATATGGCTACCACAAATGGTATGCCAGTATCTCCAAATG
GCTATCCCATTTCCCCAACCAGCATTCCTGTGTCACCAAATGGATATCCAGCATCGTTGAATGGTATTGAAGTGACTCAAAATGGGTTTCCAGCCTCTCT
AGTCGGTTCAGAAGAAACACCCACGTCAGTTTCTGTTGATGTTGGTGGTGAAAACAAGAGTGAGGCTGCAGCAGAAAATGGCACTGAAAATTCTGAGATT
GAAGTAGGAGTTGAAAACCATTCAAGTGATTATGAAAATCAAAAATATCAAGAAGAAAACGTAAATCCTGAAATAGGAGAGAAGCCTGCAGAGGTCGCGG
TGACTAGTGATACTGTTGTAGCAAAAGAAACTTGTGATAGCTTGCCAACTGAGGAGAAACCAAGCAAGTGTTGGGCAGATTACAGCGACAACGAAGCCGA
GATCGTTGAGGTTGCAAGTTGA
AA sequence
>Potri.018G102500.1 pacid=42801004 polypeptide=Potri.018G102500.1.p locus=Potri.018G102500 ID=Potri.018G102500.1.v4.1 annot-version=v4.1
MAPRTGKAKPHKAKGEKKKKEEKVLPTVIEATVETPDDSQVTLKGISTDRILDVRKLLGVHVETCHLTNFSLSHEVRGPRLKDSVDIISLKPCHLTIIEE
DYTEDLSIAHIRRLLDIVACTTSFGASSTSPTKPAGRIGNSKESGSKEISSTETRGDNKKSVSKSGNDDCTDAMEKADAEVSMCPPPRLGQFYDFFSFSH
LTPPVQYIRRSNRSFVEDKTEDDYFQIDVRVCSGKPMKIVASRKGFYPAGKRLLLCHSLVSLLQQISRVFDAAYKALMKAFTEHNKFGNLPYGFRENTWV
VPPVVADNPSGFPPLPVEDENWGGNGGGHGKDGKHDYRPWAKQFAILAAMPCKTSEERQIRDRKAFLLHSLFVDISVFKAVAAIKHIVESNQCFLSDLGK
SVLHEERVGDLIIIVMRDASDASTKLDCKNDGCLVLGVSQEELAQRNLLKGITADESATVHDTPTLGVVVVQHCGFTAVVKVSSEVNWEGNRIPQDISIE
DQTEGGANALNVNSLRMLLHNSSTPQSSSTPQRLQGGDHESLRSARSLVRKILEDSLLKLQEESSRCTKSIRWELGACWIQHLQNQASGKAEAKKTEETK
PEPAVKGLGKQGALLREIKKKTDVRTSKTEEGKDVSSGTNLDTSKKSDSTNQKESEKMDEKMEVMWKKLLPEAAYLRLKESETGLHLKTPDELIEMAHKY
YADIALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMCSLGRVVELADKLPHVQSLCIHEMIVRAFKHILQAVVASVNNVADLAACIASCLNILLGTPST
ENEDSDIINDEKLKWKWVETFLAKRFGWRWKHENCQDLRKFAILRGLSHKVGLELLPRDYDMDNASPFKKSDIISMVPVYKHVACSSADGRTLLESSKTS
LDKGKLEDAVNYGTKALLKLVSVCGPFHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRA
LYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQ
DAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYITPDADMKAREAQKKARAKVKGKPGQNEDTVSDEYQKDEILSPTYPVAENSSDKE
NKSETQFVEPRNDKSDLGLPDESLLKNDDMTLEDNSEEGWQEAVPKGRSPTSRKSSGSRRPSLAKLNTNFMNVPQSSRFRGKPSNFASPKTSPNDPAASN
AMTVPVRKKFVKSASFGPKVNNSGASTGGAEKSSNAKSAPATPASTEQAAKAAPMASPISVQAAGKMFSYKEVALAPPGTIVKAVAEQLPKGNPTKEPSP
QGSHETAATDVKSEGVTALKAVEVGKLQKPEGERQLPASEGMKSPVDQERETGGVLVATEKLEEIKFADEDHIDTEDGGAEIKVVTVKDTTAEAETISDL
GHENLDTSKDSNTMSSPTEVPDTRASDGFPSACPDLKPQSTSIEKAGLLEKDSSSTNEKVEDENTPDLSNDNTNAKLLSTGGVKQDDAETGKEATKKLSA
AAPPFNPSTIPVFSSVTVPGFKDHGLLPPPVNIPPMLTVNPVRRSPHQSATARVPYGPRLSGGYNKSGNRVPRNKPSFHNGEHTGDGNHFSPPRIMNPHA
AEFVPCQPWVPNGYPLQHNGYMATTNGMPVSPNGYPISPTSIPVSPNGYPASLNGIEVTQNGFPASLVGSEETPTSVSVDVGGENKSEAAAENGTENSEI
EVGVENHSSDYENQKYQEENVNPEIGEKPAEVAVTSDTVVAKETCDSLPTEEKPSKCWADYSDNEAEIVEVAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G28080 Tetratricopeptide repeat (TPR)... Potri.018G102500 0 1
Potri.006G164050 1.41 0.9703
AT3G56040 UGP3 UDP-glucose pyrophosphorylase ... Potri.010G185800 1.73 0.9588
AT4G04350 EMB2369 EMBRYO DEFECTIVE 2369, tRNA sy... Potri.011G009600 2.44 0.9621
AT4G17300 ATNS1, NS1, OVA... ovule abortion 8, Class II ami... Potri.017G028800 6.48 0.9436 NS1.2
AT4G34830 PDE346, MRL1 PIGMENT DEFECTIVE 346, MATURAT... Potri.004G166600 8.66 0.9367
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Potri.001G015601 9.38 0.9384
AT1G03670 ankyrin repeat family protein ... Potri.018G077766 10.00 0.9467
AT5G58770 Undecaprenyl pyrophosphate syn... Potri.009G045500 10.39 0.9382
AT4G15440 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) Potri.014G155800 10.95 0.9409 HPL1.1
AT1G64430 Pentatricopeptide repeat (PPR)... Potri.003G140800 12.00 0.9323

Potri.018G102500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.