Plant FIBer expression Database

Potri.018G102800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30780 501 / 1e-172 unknown protein
AT2G24100 482 / 9e-167 ASG1 ALTERED SEED GERMINATION 1, unknown protein
AT3G05770 131 / 3e-33 unknown protein
AT1G54300 117 / 5e-29 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G180500
[exp]
944 / 0 AT4G30780 503 / 2e-173 unknown protein
Potri.003G185050
[exp]
534 / 0 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein
Potri.001G041800
[exp]
507 / 5e-176 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein
Potri.013G009000
[exp]
216 / 5e-63 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein
Potri.005G014600
[exp]
176 / 2e-48 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036602
[exp]
744 / 0 AT4G30780 511 / 5e-176 unknown protein
Lus10035819
[exp]
740 / 0 AT4G30780 514 / 3e-177 unknown protein
Lus10041622
[exp]
400 / 9e-135 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein
Lus10024097
[exp]
392 / 2e-131 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein
Lus10010920
[exp]
179 / 1e-50 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein
Lus10029847
[exp]
154 / 1e-39 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein
Lus10029846
[exp]
142 / 2e-36 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein
Lus10020694
[exp]
134 / 1e-33 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein
Lus10007704
[exp]
91 / 1e-21 AT4G30780 74 / 1e-16 unknown protein
Lus10024256
[exp]
57 / 4e-09 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein
PFAM info
Representative CDS sequence
>Potri.018G102800.1 pacid=42800613 polypeptide=Potri.018G102800.1.p locus=Potri.018G102800 ID=Potri.018G102800.1.v4.1 annot-version=v4.1
ATGAATTCAGGGGACTTGAAGGGACAACGTGAAACGACGTCGAGTTCGTCGTCGTCGTCGTCGCGGGGCAAAAGAGCAGCTGTGAAGCTAGAGATCGTAG
AGGATCCATTAGAGGAAAAATATGGACCTCTTCACAAGCGATCCAAAGCTTCACAAACCATTCAGCAGTGGGGTGCGGGTGCTAATGCAGTACCGGTTTC
TGCTGCGGAATATAATCCGTTAGACGAGCCTAGTCCGCTTGGATTGCAGTTGAGGAAGAGCCCATCATTGTTGGATTTGATTCAAATGAGGCTTACTCAA
GGGAATAATGCTTCCGCGCTCGGAACTCAAGAGACGGAGAAGCAGAATCTAGGTGTTAAGAAGGAGAGTAAGAGTGCACCTGCTTCTGGCTCCATGGACA
AGCTTAAGGCTTCAAATTTCCCTGCCTCCATTTTGAGGATTGGGAGCTGGGAGTATAAATCGAGATATGAAGGTGATTTAGTGGCCAAGTGTTACTTTGC
AAAGCATAAGCTGGTTTGGGAAGTTCTTGAAGGTGGTCTTAAGAGTAAGATTGAAATCCAGTGGTCTGATATTATGGCTCTCAAGGCAAACTGTCCTGAT
AATGAACCTGCGACATTGAATGTTGTGCTTGCCAGACAGCCCCTCTTCTTCAGGGAAACTAATCCACAGCCCCGAAAACATACCTTGTGGCAGGCAACGG
CAGATTTTACTGATGGACAGGCTAGCATACACAAGCAACATTTTCTGCAATGTCCAGAAGGGCTGTTAAATAAACATTTTGAAAAGTTGATCCAGTGTGA
CATGCGTTTGAACTTCTTAAGTCAACAGCCAGAGATAATTTTGGATTCACCATATTTTGAACAGAGACCATCTGTTTTTGAGGATCTGGATGATTCAAAA
AGTCAAGATTTTAATCAAGTGGAGTCGGCTAAGGTATCTGTTGTTTCTGGCTTCCAGGATCTAGCATCACCATCTGCAGCTCAATCATCTTCCTTAGAGA
TTGAGAAGGGGGATCCCACTGCTTCGACATCAGACCCTATGTCCCGAGAAGCTCCTTCTCCCAGCTCAGTGATGGACAGTCGTGCAATTGAAGGGAGGGG
GATTTGTGAAGCTGTTGATTCTAAAGCACCAAGGAACTGGGATCAGATTAAAGTTCCAGGGTTGCGCCCTTCTATGTCGATGACTGATCTTATGAACCAC
ATTGGGAACTGTATTTCAGAACAGATGACCTCTGGAAATCAACCCTTTTCTGCTGATGGGTCAGAATGCCAGGACATACTAGAGGACATCGCACAGTACC
TTCTTAGCGACACCCAACAAACAACATCCTCTGATGAGAAAGGGATCATGGCAAGGGTCAACTCTCTCTGTTGCCTTCTGCAGAAGGACCCTGCTTCAAC
CCAGAACTTGCAGGGTAACGGGGAAAGTTTCTTTGAAGAGCCTAACAATGGGAAGGGCGTTCTGCTAAACCACACCAATGAATCATTTCATGAGAATAAA
GTTAGAGGTGATATCAGAGGCTCTGAAGGTAGCAGTAGCAAGGATATTTCTGGCAGCAAGCCGGCACCAGGAATGTCAAGGAAAGACTCGTTCGGGGACC
TGCTACTTCATCTCCCTCGAATAGCATCTCTTCCAAAGTTCTTATTCAATATTTCTGAAGAAGATGGTTACAGTCAAGATAGATAG
AA sequence
>Potri.018G102800.1 pacid=42800613 polypeptide=Potri.018G102800.1.p locus=Potri.018G102800 ID=Potri.018G102800.1.v4.1 annot-version=v4.1
MNSGDLKGQRETTSSSSSSSSRGKRAAVKLEIVEDPLEEKYGPLHKRSKASQTIQQWGAGANAVPVSAAEYNPLDEPSPLGLQLRKSPSLLDLIQMRLTQ
GNNASALGTQETEKQNLGVKKESKSAPASGSMDKLKASNFPASILRIGSWEYKSRYEGDLVAKCYFAKHKLVWEVLEGGLKSKIEIQWSDIMALKANCPD
NEPATLNVVLARQPLFFRETNPQPRKHTLWQATADFTDGQASIHKQHFLQCPEGLLNKHFEKLIQCDMRLNFLSQQPEIILDSPYFEQRPSVFEDLDDSK
SQDFNQVESAKVSVVSGFQDLASPSAAQSSSLEIEKGDPTASTSDPMSREAPSPSSVMDSRAIEGRGICEAVDSKAPRNWDQIKVPGLRPSMSMTDLMNH
IGNCISEQMTSGNQPFSADGSECQDILEDIAQYLLSDTQQTTSSDEKGIMARVNSLCCLLQKDPASTQNLQGNGESFFEEPNNGKGVLLNHTNESFHENK
VRGDIRGSEGSSSKDISGSKPAPGMSRKDSFGDLLLHLPRIASLPKFLFNISEEDGYSQDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30780 unknown protein Potri.018G102800
[exp]
0 1
AT2G37980 O-fucosyltransferase family pr... Potri.016G109700
[exp]
10.77 0.6440
AT1G27100 Actin cross-linking protein (.... Potri.010G035100
[exp]
17.00 0.7345
AT3G16720 ATL2 TOXICOS EN LEVADURA 2 (.1) Potri.010G010500
[exp]
23.74 0.6812
AT2G33580 Protein kinase superfamily pro... Potri.005G259600
[exp]
37.61 0.6787
AT2G04305 Magnesium transporter CorA-lik... Potri.001G285300
[exp]
42.42 0.6590
AT1G07900 AS2 LBD1 LOB domain-containing protein ... Potri.008G043900
[exp]
45.72 0.6542
AT3G62220 Protein kinase superfamily pro... Potri.002G188600
[exp]
46.55 0.6641
AT2G20880 AP2_ERF AtERF53 ERF domain 53, Integrase-type ... Potri.013G135600
[exp]
50.43 0.5739
AT1G07430 HAI2 highly ABA-induced PP2C gene 2... Potri.009G037300
[exp]
67.04 0.6428
AT1G27600 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGU... Potri.002G107300
[exp]
70.65 0.6022

Potri.018G102800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.