Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30790 1392 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180800 [exp] 1969 / 0 AT4G30790 1261 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005509 [exp] 1613 / 0 AT4G30790 1486 / 0.0 unknown protein Lus10007701 [exp] 1584 / 0 AT4G30790 1493 / 0.0 unknown protein Lus10007700 [exp] 1402 / 0 AT4G30790 1327 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10377 [poplar] [flax] ATG11 Autophagy-related protein 11
Representative CDS sequence Show only first row Show all	>Potri.018G103000.1 pacid=42800922 polypeptide=Potri.018G103000.1.p locus=Potri.018G103000 ID=Potri.018G103000.1.v4.1 annot-version=v4.1 ATGAGTTCAAGCATCACAGAAGGTGTGGTAAATCAGCCCAAACTTTTAGTTCATCTAGCAGAAAATGGTCATTCATTTCTACTTGATTGCGATGAAACAA CGCCTGTGGAAGCTGTCATGCAGCGTATTGAATCAGTTTCTGGGATTAACTTCAACTACCAGCTTGTTCTGTGTTTGGAGAAGAAACTTGAACCTCAGCG GTCGCTTTCTGCTTATAAGCTTCCATCTAGTGATGGAGAAGTGTTTATATACAACAGAGCAAGGATGCAAACCAATCCGCTCCCCCCTGCACTCGAACAA ATTGATGTCCTTGAAATTGCAGATCCTCCACCGCCAGCTTCTTCACATAACCCCCATCCTTTAGATGATGCTTCAGACCCAGCTCTGAAGGCTTTGCCAT CTTATGAAAGACAGTTTAGGTACCATTACCATAGAGGTCAAGCAATGTATAGGAGAACCCAAGTAAAGCATGAGCATTGCCAGAGGTTATTGAGGGAGCA TAAGGTTCAGGAGAGGGCAATGGAGGTTGCTAGGATTAATGTGCAACAATTCTATAGAGCAATTCTTCAGAATTACTCAGAGTTCATGAAGCGTTATACA CAACAACACAGGATACATTTAGATCTTTTAACGAATTTTGAGAGAGATTTAGAGAAACTGAGGTCGATCAAGCTTCATCCATCTTTGCAGTCTGATTCAC GCAAATGCTTAGTGGATTTTGTGAAGGAAGATAACTCGAGGAAGGCCGTGGAGAATTGTAGCAATTCACATAGGCAGTTTGAGAAGAAGGTATTGGAGTT CAAGCAAAACTTTAGTGATGCAAAGCGCAAGGTGGAAGAATTATTTTCTTGCGGAGCAGCATCTTCTATTAGGAATCTGGATCTTACCATCAAGGAGCAT CAGCGATTCATCAATGAACAGAAGAGCATAATGCAGTCTTTGAGCAAAGATGTAAGCACGGTAAAGAACCTTGTGGATGATTGTCTGTCATGCCAATTGT CTTCCTCAATTCGACCTCACGATGCAGTTTCAGCCCTGGGCCCTATGTATGATGTCCATGACAAGAATCATTTGCCCAGGATGCTGGCTTGTGAACATTC AATTTCCAAGCTGCTTGATTTTTGCAATGATAAGAAGAATGAGATGAATGTCTTTGTGCATGATTACCTACAAAAGATCGCTTATGTTACTTACCTCATG AAAGATGTGAAGTTACAGTTTCCTGCTTTTAGAGAGGCAATGTTGTGTCAGGATAATATTTTTAGGGACTTGAAGCTATTTCGTGGGATCGGTCCTGCAT ATAGAGCCTGCCTTGCTGAAGTTGTGAGAAGAAAGGCTTCCATGAAACTTTACATGGGTATGGCTGGACAACTGGCTGAGCGGCTTGCTACAAGGAGGGA GGTTGAGGTTAGGAGACGGGAGGAGTTTCTGAAGACAAACAATTTATATATACCAAGAGATATATTAACATCAATGGGGCTATATGATACTCCTAATCAG TGTGATGTCAATATAGCTCCATTTGACACTAATTTGCTTGATATTGACATCTCAGACCTGGACCGTTATGCTCCTGATTATTTGGTTGGACTTCCTTCAA AAGGTGATAAGACTGCAAGCTTGAAAGGTTCATTTTCTACATCTAATGACTGCTCTCACTCAACTGAGATGGAAGAAATTGGTGAGGAAGCAGTTGAGAA AGATGGCTCTGAGGAGCCCCTCGAGGACTGTGAGCTGTTAGAGATTGCTGGAACTAGCAAGATGGAAGTTGAGAATGCAAAACTGAAAGCTGAACTAGCT TCTGCAATAGCCCTGATATGTTCCCTTTGCCCAGAAATTGAATACGAGTCAATGGATGATAGCACAGTGGATAGTCTATTGAAGAATGCAGATAAGACAA ATGAAGCCTTGCGGCTGAAAGATGAGTATGGAAAGCACCTTCAATCTTTGCTTAAGGCAAAGCATGTGCAATGTATGTCGTATGAGAAGCGCATTCAAGA ACTAGAGCAGAGATTGTCTGACCAGTATTTACAGGGGCAGAAACTTTCAAATAGTAAAGATGCATCAGACTTTGCTCTTTTAGCTGCAAAGACTGAAGAC TGTAAACCAGAAATTTCCAGCGGTGGTGAAGCACACATGCCTTATGCATTGACCTCAGAGCCCATGGATGAGGTTTCTTGCATTTCTAGTTTGAATGCGA AACTGGGGCTTTTCACCAGGCAAACAAGCAAAGGTAGAGAAGGTTTTGATGAAAATATGATGGACTCCTCTGGGATGTTGAATACTCAGTTGGATTCATC AATGGCGGAGCCTCATCGTGAAGAGCTGCAAGTTTGTGATAAAGATGGGAAGGACAAGATGGCGCGACAACTGGGCATGTCACTGACTAACAGTTCCACA GCTGAGAGCATGCCTGAGCCTCTCGATGTTGCACCATCTGATGCAGACGCTGAGCCTAAAGTCAGTAGTGACCATGACATTGTGTTAGACCTTCAAACTG CACTTGCTGAAAATTCAAACCAATTGAGTGAAACTGATGCAAAGCTCAAATCTGCTGTGGAGGAGGTTGCTGTGCTCACAAGGGAGTTAGAAATGAGTCG GAAGCTCCTTGATGAATCTCAGATGAATTGTGCTCACTTGGAGAATTGCTTGCATGAAGCAAGAGAGGAAGCTCAAACTCATCTTTGCGCGGCTGATCGA AGGGCTTCGGAATACAATAAACTGCGGGCATCTGCTGTGAAACTCCGTGGCCTTTTTGAAAGGCTTAGGTGCTGTGTATATGCTCCAGGTGGAGTTGCTG GTTTTGCTGATTCTTTGCGTGCTTTAGCTCAATCTTTGGCCAATTCAAGCAATGACAATGAGGATGAGGGTGCTGCTGAGTTCCAGAAATGCGTACGCGT CCTTGCTGATAAAGTTGGTTTCTTGTCCACACACCTTGATAAGTACCCCAAGCTCGAAGCTGCAAATGAACAACTTGGAAAAGAATTGGAAACGAAGAAG GAGCTGGTTGCAACTTTGTACAAAAAGCATCAACTTGAGAAGCAGGCAAACAAAGAAAGGATATCTTTTAGCCGGTTGGAAGTTCATGAGATCGCTGCAT TTGTTCTCAACTCAGCTGGACATTATGAGGCTATCAACCGGAACTCCTCTAACTACTACCTGTCTGCTGAATCTGTGGCCCTGTTCACAGACCATCTCCC AAGCAGACCCAGCTACATTGTTGGGCAGATTGTGCATATTGAACGCCAAGCTGTAAAGCCATTGCATCCTGCCTCAACTAGGCCTGAGCATGGTAGGGCA GATCAACTGGATCTTCTGACCACTGACCAAGGGATTGACCTGTTGAACTTCAATTTGGGATCGACTTCCAACCCATACAATCTTCCTATGGGGTGTGAAT ACTTTGTAGTGACAGTAGCCATGTTACCTGATACAACCATTCATTCAGCGCCTCCTTCCTGA
AA sequence Show only first row Show all	>Potri.018G103000.1 pacid=42800922 polypeptide=Potri.018G103000.1.p locus=Potri.018G103000 ID=Potri.018G103000.1.v4.1 annot-version=v4.1 MSSSITEGVVNQPKLLVHLAENGHSFLLDCDETTPVEAVMQRIESVSGINFNYQLVLCLEKKLEPQRSLSAYKLPSSDGEVFIYNRARMQTNPLPPALEQ IDVLEIADPPPPASSHNPHPLDDASDPALKALPSYERQFRYHYHRGQAMYRRTQVKHEHCQRLLREHKVQERAMEVARINVQQFYRAILQNYSEFMKRYT QQHRIHLDLLTNFERDLEKLRSIKLHPSLQSDSRKCLVDFVKEDNSRKAVENCSNSHRQFEKKVLEFKQNFSDAKRKVEELFSCGAASSIRNLDLTIKEH QRFINEQKSIMQSLSKDVSTVKNLVDDCLSCQLSSSIRPHDAVSALGPMYDVHDKNHLPRMLACEHSISKLLDFCNDKKNEMNVFVHDYLQKIAYVTYLM KDVKLQFPAFREAMLCQDNIFRDLKLFRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATRREVEVRRREEFLKTNNLYIPRDILTSMGLYDTPNQ CDVNIAPFDTNLLDIDISDLDRYAPDYLVGLPSKGDKTASLKGSFSTSNDCSHSTEMEEIGEEAVEKDGSEEPLEDCELLEIAGTSKMEVENAKLKAELA SAIALICSLCPEIEYESMDDSTVDSLLKNADKTNEALRLKDEYGKHLQSLLKAKHVQCMSYEKRIQELEQRLSDQYLQGQKLSNSKDASDFALLAAKTED CKPEISSGGEAHMPYALTSEPMDEVSCISSLNAKLGLFTRQTSKGREGFDENMMDSSGMLNTQLDSSMAEPHREELQVCDKDGKDKMARQLGMSLTNSST AESMPEPLDVAPSDADAEPKVSSDHDIVLDLQTALAENSNQLSETDAKLKSAVEEVAVLTRELEMSRKLLDESQMNCAHLENCLHEAREEAQTHLCAADR RASEYNKLRASAVKLRGLFERLRCCVYAPGGVAGFADSLRALAQSLANSSNDNEDEGAAEFQKCVRVLADKVGFLSTHLDKYPKLEAANEQLGKELETKK ELVATLYKKHQLEKQANKERISFSRLEVHEIAAFVLNSAGHYEAINRNSSNYYLSAESVALFTDHLPSRPSYIVGQIVHIERQAVKPLHPASTRPEHGRA DQLDLLTTDQGIDLLNFNLGSTSNPYNLPMGCEYFVVTVAMLPDTTIHSAPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30790			unknown protein		Potri.018G103000 [exp]	0	1
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	2.23	0.9092
AT2G24580			FAD-dependent oxidoreductase f...		Potri.018G008700 [exp]	2.44	0.9235
AT2G14095			unknown protein		Potri.002G101500 [exp]	2.44	0.9247
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G096042 [exp]	8.00	0.9111
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Potri.001G378400 [exp]	8.36	0.8514	GA2ox1,GA2.7
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.002G228400 [exp]	9.16	0.9129
					Potri.011G047300 [exp]	9.16	0.9082	PPO3
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	10.95	0.8918
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	11.22	0.9073
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.003G148400 [exp]	12.08	0.8301

Compare expression of checked genes

Potri.018G103000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.